Geobacillus icigianus: ACPVTF_12695
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Entry
ACPVTF_12695 CDS
T11292
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gic Geobacillus icigianus
Brite
KEGG Orthology (KO) [BR:
gic00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACPVTF_12695 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gic03021
]
ACPVTF_12695 (rpoD)
Transcription machinery [BR:
gic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACPVTF_12695 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
DUF2408
DUF2316
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
XRN32082
LinkDB
All DBs
Position
complement(2493755..2494885)
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AA seq
376 aa
AA seq
DB search
MAEKPAQSKQAEAAGESLEQVKEQLAELGKKRGILTYEEIAERLSGFDLDSDQMDEYYEY
LADQGIEVISESGLEADPDLDELEKEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVPLLS
AEEEIELAKRIEQGDDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAV
EKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGR
EPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAA
YELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR
KLRHPSRSKRLKDFLE
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaaccagcccaatccaaacaggctgaagctgccggcgaatcgctcgagcaa
gtcaaagagcagctcgctgagctggggaaaaagcggggcattctcacctacgaggagatt
gctgagcggctgtccggattcgatttggactccgaccagatggacgaatattatgaatac
cttgctgaccaaggcattgaagtcatcagcgaatctgggttggaggcggacccggatctt
gacgagctggagaaagaggaggagtttgatttaaacgatttgtccgttccccctggcgtc
aaaatcaacgacccggtgcgcatgtatttaaaagaaatcggccgcgttccccttttgtca
gccgaagaggaaatcgagctggccaagcggatcgagcaaggcgatgatgaggaagcgaag
cgccggttgacagaagccaacctccgccttgtcgtcagcatcgccaaacggtatgtcggc
cgcggtatgctctttctcgatctgatccaagaagggaacatgggcttaatcaaggcggtc
gaaaagtttgactaccgaaaaggctataaattcagcacgtacgcgacttggtggatccgg
caagccatcacgagggcgatcgccgatcaggcgcgaacgatccgcatccccgttcatatg
gtggaaacgatcaataaattgattcgcgtccaacggcagctgctgcaagatctcggccgc
gaaccaacgccggaagaaatcgccgaagaaatggatttgacgccggagaaagtgcgggaa
attttaaaaatcgcccaagagcccgtgtcgctggaaacgccgatcggtgaagaggacgac
tcgcatcttggcgacttcatcgaagaccaagacgccacctcgccctcggaacacgccgct
tacgagctgttaaaagagcagctggaagatgtgctcgacacgttgaccgaccgcgaggaa
aacgtgctccgtctccgctttggtcttgacgacggaaggacgcgaacgctcgaagaagtc
ggcaaagtgttcggtgtgacgcgcgagcgtatccggcaaatcgaagcgaaagcgttgcgc
aagctgcgtcatccaagccgcagcaaacggttgaaagactttttggaatga
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