Gilvimarinus sp. DA14: NHM04_01260
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Entry
NHM04_01260 CDS
T08272
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHM04_01260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gil03019
]
NHM04_01260
03009 Ribosome biogenesis [BR:
gil03009
]
NHM04_01260
Enzymes [BR:
gil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NHM04_01260
Messenger RNA biogenesis [BR:
gil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NHM04_01260
Ribosome biogenesis [BR:
gil03009
]
Prokaryotic type
rRNA helicases
NHM04_01260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
TA0956
AAA_19
UvrA_inter
Transketolase_C
Motif
Other DBs
NCBI-ProteinID:
UTF60452
UniProt:
A0A9J7A7W3
LinkDB
All DBs
Position
complement(311111..312808)
Genome browser
AA seq
565 aa
AA seq
DB search
MSSENIAFSELNLSQPVLNAISKIGYETPSPIQARAIPALLDGKDIVGLAQTGTGKTAAF
ALPLLSSIDTKSTDTQVLVLAPTRELAIQVAEAFQSYASELNNFHVLPIYGGQDMRGQLR
QLKRGAQVVVGTPGRVMDHLRRGSLDLSGLKAMVLDEADEMLRMGFIDDVTWIMEHTPET
RQTALFSATMPKEIRRVANTYLRSPEEIKIARESTTGSNIEQAYWMVSGTNKLDALTRIL
EVEPFDGIIMFVRTKTATVELAEKLEARGYSAAAINGDMNQALRERTIERLKNKSLDILI
ATDVAARGIDVERVSHVINYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLYSI
EKATGQRIEAMKLPSGDTVSAARIDQFLQQITDVVNSEEDMSFFEELLAKYSRENDLEPE
AIATALAYLLQKNRPLQVKFAEIKPERERSRDRGERGERPRRSNRGPEEGMKRYRIEVGR
NHGARPGDIVGAIANEAGLKGRSIGQIKLFDSFATLDLPEDLAPAQTKKIASLHVRGQQL
SLSEDRGPMRKGGDKGKAKPRKRKA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagaaaacattgctttttccgagctgaacctgtctcagcccgttcttaacgcc
atttctaaaattggctacgaaaccccctcaccgattcaagcacgcgccattcccgcgctg
ctggacggtaaagatattgtcggcctggcacaaaccggtaccggtaaaaccgccgctttt
gccctgcccctgctgtcgagcatcgacaccaagagcaccgacacccaagtgctggtgttg
gccccgacccgcgaactggccattcaggtcgccgaagcctttcaaagctatgctagcgag
ctgaacaactttcacgtactgcccatttacggcggtcaggatatgcgcggccagctgcgc
cagttaaagcgtggcgctcaagtggtggtaggcacccccggccgtgttatggaccatttg
cgtcgcggcagtctggatttatccggccttaaagccatggtgctggacgaagccgacgaa
atgctgcgcatgggctttattgacgacgtgacctggattatggagcacacccccgagacc
cgccaaaccgcgttgttttcggccaccatgcccaaagaaattcgccgtgttgccaacacc
tacctgcgctcgcccgaagaaattaaaattgcccgcgaaagcaccactggcagcaacatc
gagcaggcctactggatggtaagcggcaccaacaaactggatgccctaacccgtattctg
gaagtggagcctttcgacggcatcatcatgttcgtgcgcaccaaaaccgccaccgtcgaa
cttgccgaaaaactcgaagcccgtggttacagtgctgccgccattaacggcgacatgaac
caggcgctgcgcgagcgcaccattgagcgcttaaaaaacaaatcgctggatattctgatt
gccaccgacgttgccgcccgcggtattgacgttgagcgcgtcagccacgttattaactac
gacattccttacgacagcgaagcctacgtacaccgcattggccgcaccggccgcgccggt
cgctcgggcaaagccatcttgtttgtcgccccgcgcgaaaaacgcctgctttactcaatc
gagaaagccaccggccagcgcattgaagccatgaagctgcccagcggcgacacggtcagt
gccgcgcgtatcgatcagttcttgcagcagattaccgatgtggtcaacagcgaagaagac
atgagctttttcgaagagctgctggccaaatacagccgtgagaacgacctagagccagaa
gcgattgccaccgccctggcctacctgctgcaaaagaaccgtccgctgcaggttaaattt
gccgaaatcaaacccgagcgcgagcgcagccgtgatcgcggcgagcgtggcgaacgcccc
cgtcgcagcaaccgtggcccggaagaaggcatgaagcgctaccgcattgaagtgggccgc
aaccacggcgcacgcccaggtgatatcgtcggtgccatcgccaacgaagccggtttaaaa
ggccgcagcatcggccagattaaactgttcgacagcttcgcgaccttggatctgcctgaa
gacctagctcccgcacagacgaagaaaattgcctcgctgcatgtgcgtggtcagcagttg
tcactgagtgaggaccgcgggcctatgcgtaaaggtggggataaggggaaggctaagccg
cgtaagcgtaaagcgtaa
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