Gilvimarinus sp. DA14: NHM04_01625
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Entry
NHM04_01625 CDS
T08272
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NHM04_01625 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gil03400
]
NHM04_01625 (uvrB)
DNA repair and recombination proteins [BR:
gil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHM04_01625 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NHM04_01625 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UTF60522
UniProt:
A0A9J7A666
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All DBs
Position
399907..401913
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AA seq
668 aa
AA seq
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MTKQFSVESAFQPAGDQPTAIAELTEGLESGLAHQTLLGVTGSGKTFSIAHVVARAQRPT
LVMAHNKTLAAQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALMERKDAIVIATVSAIYGLGDPESYLKMILHLVRGDRIDQRKILRRLAELQ
YTRNDMDFQRATYRVRGDVIDIFPADSEFEAVRVELFDDEIEQISIFDPLTGEVLSKVPR
MTIYPKSHYVTPRERIVQAIEDIKVELDERLKQLRDNDKLVEAQRLEQRTRYDLEMMQEL
GYCNGIENYSRYLSGRDPGEAPPTLFDYLPAESLLVIDESHVTVPQIGAMYKGDRSRKET
LVEYGFRLPSALDNRPMRFDEWEARAPQMIFVSATPGPYENEHAGQVVEQVVRPTGLVDP
QVEIRPASTQVDDVLSELKRRVEADERVLITVLTKRMAEDLTEYLTEQGVRVRYLHSDID
TVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSDRSLIQTIGR
AARNVNGKAILYADRITGSMQRALDETERRREKQIQHNLEHGITPQGIRKNVADILEGAQ
VPGAGLKGRRKSDKRGASETVVIAEGGDVFKHIERLENEMMKAAKDLEFEKAAALRDQIQ
TLKHQAAG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgactaaacaattctcggtcgagagcgctttccagcccgccggcgatcagcccaccgca
attgccgagctgactgaggggctggagtcggggctcgcccatcaaactctgctaggggtt
accggttcaggtaagaccttctctattgcccatgtggtggcccgcgcccagcggcccact
ctggtcatggcgcacaacaaaactctggcggcacagttgtacggggagtttaaagagttc
tttcctcataacgccgtagagtattttgtctcctactacgattattatcagcccgaggcc
tatgtgccttcgtcggatacctttattgaaaaagacgcctcggtcaacgaacacatcgaa
cagatgcgcctgtctgccactaaggctttgatggagcgcaaagacgccatcgtgatcgcc
actgtgtcggctatttacggcttgggtgaccccgagtcttacctgaaaatgattttgcat
ctggtgcgcggcgaccgtatagatcagagaaaaattctccggcgcctggccgagctgcaa
tacacccgtaacgatatggattttcagcgcgccacttatcgggtgcgcggtgatgtgatt
gatatttttccggccgactcagaatttgaagcggtgagggtagagctgtttgacgatgag
atcgagcagatatctattttcgatcctctcaccggcgaggtgcttagcaaagtgcctcgc
atgaccatctatcccaaatcccactatgtgactccgcgcgagcgaattgttcaggctatt
gaagatatcaaagttgagctggatgaaaggctcaagcagctgcgcgacaatgacaagctg
gtggaggcgcagcgactagagcagcgcactcgctacgatttggagatgatgcaggagctc
ggctattgcaacggcattgaaaactactcgcgctatctgtcgggccgagatccaggtgaa
gctccgcccacactgttcgattacctgccagcagagtcgctgttagtgattgacgaatct
catgttaccgtgccgcaaataggtgctatgtacaaaggtgatcgctcgcgcaaagaaact
ctggtggagtatggctttcgtttgccgtcggccctcgacaatcgcccaatgcgctttgat
gaatgggaggcgagggcgccgcagatgatctttgtctcggccactcccggcccctacgaa
aacgagcacgccggacaggtggtagagcaggtagtgcgccccacggggctggtggatccg
caagtggagatccggccggcctcaacgcaggtggatgatgttttgtcggagctaaagcgc
cgggtcgaagccgatgagcgggtgttaattaccgtgcttactaagcgtatggcggaagat
ttaactgagtatctgaccgagcaaggtgttcgagtacgctacctgcactcggatatcgat
accgtcgaacgagtggaaattatacgcgacctgcgtctcggtgagttcgacgtactggtg
ggcattaacctgttgcgcgaggggctggatatgcccgaagtgtcactggtggctattttc
gatgccgataaagagggttttctgcgctctgatcgctcgcttattcaaaccattggtcgg
gccgcgcgcaacgtgaacggtaaagctattctctacgccgatcgtattaccggctcgatg
cagcgcgctttggatgaaaccgaacgtcgtcgcgaaaaacaaattcagcacaatctggag
catggcattacgccccagggtattcgtaaaaatgtggcggatattctcgaaggcgcgcaa
gtgccaggagcaggtctgaaaggccgtcgcaagtcggataaacgcggcgcctccgaaacc
gttgtgatcgccgagggcggcgatgtgtttaagcacattgagcgtttggaaaacgaaatg
atgaaagcggccaaagatctcgagtttgaaaaagccgctgcgctgcgcgatcagattcaa
actctcaagcatcaggcggccggctag
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