Gilvimarinus sp. DA14: NHM04_01940
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Entry
NHM04_01940 CDS
T08272
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
gil
Gilvimarinus sp. DA14
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
gil01011
]
NHM04_01940
Enzymes [BR:
gil01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
NHM04_01940
Peptidoglycan biosynthesis and degradation proteins [BR:
gil01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
NHM04_01940
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
LysM3_NFP
LysM_RLK
LysM2_CERK1_LYK3_4_5
SLT_2
Motif
Other DBs
NCBI-ProteinID:
UTF60580
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All DBs
Position
complement(467494..469059)
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AA seq
521 aa
AA seq
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MSLIRIIIVTVSIFLASCGLLPSQQNKSNDVAPAPAAQALPSPPPASIAKPKPQVEKDLW
VRIRDGFALGPYSQEQLDEYVSWYASHPEYIERVFTRGQRYLYHIVERVEAQGLPLEIAL
MPVVESAFDPFAYSYATASGMWQFMSGTGREYGLKQNWWYDGRRDIIDSTDAALAYLERL
HQMFDDNWLHALAAYNTGQGRLQRSINRNAKAGKPTDFWSLSLPRETRAYVPQLLALSKI
IANPEKYDIELPEIVNAPYFVAVDIDSQIDLARASELAEISMDELYLLNPGYNRWATDPE
GPHRLLIPASQAEGFSAALATIPVEQRISWQRYTIKRGDSLIKIAKRFNTSPEALRTANN
LTSSRIRAGATLLIPSASEQSEHYAFSSNQRRASSQSNSKGGKGSTKVNYVVKKGDSFWR
IANQHKVSVNALAKWNGMSSRDTLRPGQKLVVWSKTSSTNGGEGITRRLTYKVRSGDSLD
TIARKFNVSIQDISRWNNVAIKNYIHPGQQLTLYVDVTGSR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaatcagaataatcatcgtcacagtaagtatttttctcgcctcctgcggttta
cttccgtcccagcaaaacaagtccaacgacgttgcccccgctcccgctgcacaggcacta
cccagcccgccaccggcaagtatcgccaagcccaaaccgcaagtagagaaggacttatgg
gtacgaatccgcgatggctttgctttgggcccctattcccaggaacaacttgacgaatat
gtgagctggtacgcaagccacccggaatacatcgagcgtgttttcacccggggtcagcgc
tacctttaccacattgtggagcgtgtcgaagcacagggactgcccctggaaattgcttta
atgcccgtagtggaaagcgcttttgaccccttcgcctactcctacgctacggcatcgggc
atgtggcaattcatgtccggcaccgggcgcgaatacggtctgaagcaaaactggtggtat
gacggccggcgcgacattatcgactcgacagacgccgctctggcctacctggagcggctt
catcagatgttcgatgacaactggctacatgcgcttgcggcgtacaataccgggcagggc
cgactccagcgctcaatcaaccgcaatgccaaagcaggtaaaccaacggacttttggtca
ttgagcttaccgcgtgaaacccgcgcctatgttccgcagcttttggccctgtccaaaatt
attgccaaccctgaaaaatacgatattgagctaccagaaatcgtcaatgccccctatttt
gtcgccgtcgatatcgactcgcaaatcgatttggctcgcgcttcagagcttgccgaaatt
tccatggatgagctctatttactaaatccaggctacaaccgctgggccaccgatccggaa
ggtccgcaccggctgttaatccccgccagtcaagcggagggattttccgccgcattagcg
acaattccagtggagcagcgtatcagctggcagaggtacaccattaagcgcggcgactca
ctgatcaaaattgccaagcgctttaacaccagccccgaagctttgcgcacggcaaacaat
ttaacatcctctcgtattcgcgcaggggcgacactgttaatccccagcgcttcagaacaa
agcgagcattacgcattcagcagcaatcaaagacgcgcctccagccagagcaactcaaaa
ggcggcaagggaagcaccaaggttaactatgtcgtcaagaaaggtgacagtttttggcgg
attgccaaccaacataaagtaagcgtaaacgctttggctaaatggaacggaatgtcgtcc
cgagacaccttacggccagggcaaaaattggtcgtatggagtaaaacctcgagcacaaat
gggggtgaaggaatcacccgcaggctgacctacaaagtcagaagtggtgactcactcgat
accattgcacgtaaatttaacgtgagcatccaagacatcagccgttggaacaatgtagcc
atcaaaaactacatccaccccggacaacaactgactctttacgtagacgtaaccggcagc
cgttaa
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