Gilvimarinus sp. DA14: NHM04_03295
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Entry
NHM04_03295 CDS
T08272
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gil
Gilvimarinus sp. DA14
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gil03016
]
NHM04_03295
Enzymes [BR:
gil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NHM04_03295
Transfer RNA biogenesis [BR:
gil03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NHM04_03295
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
SEP
Motif
Other DBs
NCBI-ProteinID:
UTF60841
UniProt:
A0A9J7A892
LinkDB
All DBs
Position
780855..782864
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AA seq
669 aa
AA seq
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MLSKDALSQLSQLKSNIVSNKEYAEGVVRPTAKRFGFVRLDDGRDAFLDPDQMLRVLPGD
RVKISLTENSKKQLEATLESLLESSLSTFVGRYVRKGPAHFVEPDLPPFSRWLFIPPQER
TNCSEGDLVQCELIRHPFKHEGKAQIRVINRIGKPEEPGIEGRYICAKFQLPGEWSEAAA
AQAATIKPDALQGLEREDLSDIPFVTIDSEFTRDMDDALYAEKTANGWRLISAIADPSSL
IELGSPLEQTAQERVSTLYLLGHPITMLPTELSHETFSLIPDAERPAVICTMDINSDGSI
EHYTFNTANIKSHHKLSYQNVSELLDDSGDTLEQELPATIIASLRALADCAKARLNYRQE
NALVMEDRADYQYWLNDNKKIERIEKRLRNTAQKVVEEAMLATNICAGELFNTHPNSAYY
SGHIGFRPERLDDVKALVAEVLPELSELDFTQLENFQRLFKTLRQNAVHSQDQARLLSLL
QRMQQAGSLTTQPVGHFGLGFNSYATVTSPIRRYQDLHNHMVLKAILRGETPQQTNEEQA
IALQETLSIGRQASRTLEQWLLCQYLSEHLGTVQFGTITGVSARGISVRLEEVGTDGFVQ
LAEKGQPKPKFDSRRLSLVTDTAEFFLDQTVAVKIKDVDVNSRRISLELVDPAMAERLQA
FDKQEQTTQ
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgctcagtaaagacgcgctgtcgcagctatcgcaattaaaatctaatattgtctctaat
aaagaatatgccgaaggtgtagtcaggcctacagccaaacgttttggctttgtccgccta
gacgacggccgcgacgcctttcttgacccagaccagatgctgcgcgtgctgccgggtgat
cgggtaaaaattagcctgactgaaaacagcaaaaagcaactcgaagcaacgctcgagtca
ttgttggagtccagcttgagcacctttgtcggtcgctacgtacgcaaaggccccgcgcat
tttgtcgagcctgacctccccccctttagccgctggctgtttatcccaccacaagagcgc
accaactgcagtgagggcgatttagtgcaatgcgagctgattcgccacccatttaagcac
gaaggtaaagcgcagattcgggttatcaatcggattggcaaacccgaagaacccggcatt
gaaggccgctatatttgcgccaagttccagcttcccggcgaatggagcgaagcggctgca
gcccaggcggcaaccatcaagccagacgcattgcagggactggagcgcgaagatctgagc
gatattccatttgttacgatcgattcggagttcactcgggacatggacgacgccctctac
gccgaaaagaccgctaacggctggcggctgatttccgccattgccgaccccagcagtctg
attgagctgggcagcccgctggagcagacagcgcaagagcgggtcagcacgctgtacctg
ctgggccatccgatcaccatgttgcccactgaactctcgcacgagactttttcgctgatt
ccagacgccgagcgcccagctgttatctgcacaatggacatcaactccgacggcagcatc
gaacactacacttttaatacggcaaacattaaatctcatcacaagctcagctatcaaaac
gttagcgaactgcttgacgacagtggcgataccctagagcaggagttgcccgcaacgatc
atcgccagcctgcgggctctggctgactgcgctaaagcgagattaaactaccgccaggaa
aatgccctggtgatggaagaccgcgccgactatcagtactggcttaatgacaataaaaag
attgagcgcatcgaaaagcgtctgcgtaatactgcgcagaaagtcgtcgaagaagccatg
ctggcaaccaatatctgtgcgggcgaacttttcaatacgcatcccaatagcgcctattat
tccggccacatcggctttcgccccgaacgcctggacgatgtaaaggcactggtggcagaa
gtgttgcccgagctgtcggagttagactttacccaactagaaaactttcagcgcctgttt
aaaactctgcgccaaaacgccgtgcactcgcaagatcaggcgcggctgctgtcgctgttg
caacgcatgcaacaagctggaagcctgactacccaaccggtgggccacttcggccttggc
tttaattcctatgccacggttacctcaccgattcgccgctaccaggatttgcacaatcac
atggtgctaaaagccattttgcgaggcgaaacaccgcagcaaacgaatgaagaacaggca
atagcactgcaagagactctcagcatcggccgccaggccagtcgcacccttgagcaatgg
cttttgtgccaatacctgagcgaacacttgggtactgtacagtttggcaccattaccggt
gtcagcgcccggggcattagcgtgcgcttagaagaggtaggtaccgatggttttgtccag
ctggcagaaaaaggccagcccaaacctaagttcgatagccgccgactcagtctggtaacc
gacactgctgagtttttcctggaccaaacggtcgcggtaaaaattaaagatgtcgacgta
aacagccgtcgtatcagtctcgaactggtcgacccggccatggccgaacgactgcaagcg
tttgacaaacaagagcaaacaactcagtaa
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