Gilvimarinus sp. DA14: NHM04_03815
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Entry
NHM04_03815 CDS
T08272
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NHM04_03815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gil03400
]
NHM04_03815 (mfd)
Enzymes [BR:
gil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NHM04_03815 (mfd)
DNA repair and recombination proteins [BR:
gil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NHM04_03815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UTF60936
UniProt:
A0A9J7A9B0
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All DBs
Position
887918..891364
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AA seq
1148 aa
AA seq
DB search
MTLADPFAPEITARAGERRQWGQLPGGAAALTLANAAKRHSGLSLVVTSDTASAQRLESE
LAFFSGKDLQILHLADWETLPYDSISPHQDIISQRLRTLYQLPSVTQGILVVPVTSLLQR
LMPKTYLMGGSLMLKVGEALNPDTLRANLTQAGYRTVDTVYEHGEYAVRGSLIDIFPMGS
EQPLRIDLFDDEIDTLRTFDPDTQMTADKIEALELLPAREFPLDKNGISAFKQRWHQRFD
TDPSACSVYRDVGDGIAPPGIEYYLPLFFDHCDTLFDYLPQNTVAYTLGDINQASERFLS
ELKSRYDSRGVDPTRPLLKPEEIYLREEELFAGLKGISRTALASHPLDDAAGNRNFSFTP
PPSLPVQAQSEHPLTALEAFLMEFDGRVLFCAESAGRRETLLELLSRIRVKPTELDSWQS
FSAGSETLAITVGGIDQGLICTSPNLALITESQLFGERVQQTRRRRQSQENADNVVKNLT
ELQVGAPVVHIDHGVGRYRGLETITIENETNEFLMLEYADEAKLYVPVTSLHLISRYSGA
DENVAPLHKLGSEAWGKAKRKAAEQVRDTAAELLDIYAKRAARKGLAFDDPKADYLAFSA
GFPFEETPDQQLAIDAVVKDMLSPQPMDRLVCGDVGFGKTEVAMRAAFVAAHGGKQVAIL
APTTLLAQQHFESLKDRFASWPFTIEVMSRFRTSKEVDAVKERLAEGKIDIVVGTHKLIQ
PDIKYKDLGLLIIDEEHRFGVRQKDQLKKLRAEIDILTLTATPIPRTLNMSMAGIRDLSI
IATPPARRLSVKTFVRQHDDATIKEAILREILRGGQVYYLHNEVKSIERTARALQELVPE
ARIGIGHGQMRERELEKVMSDFYHKRFNVMVCSTIIETGIDIPSANTIIIHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLTPERRAMTSDAIKRLEAIASAEDLGAGFTLATHDMEIRGA
GELLGDEQSGQIQTVGFSMYMDMLDRAVKALRSGKQPNIDAPLADNIDVNLRIPALIPDD
YLPDVHTRLVLYKRIAGADSQEALRELQVEMIDRFGLLPEQTKNLLRVTEIKLAAEKLGI
VKLEASAGGGKVEFGPEAPIDPLKIVQMVQSQPQVFSLAGASGLSFRIPMPDAEDRLQRV
NDLLASLH
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgacacttgccgaccctttcgcccccgagatcaccgcccgcgcaggcgagcgccgccag
tgggggcagctgccgggaggcgccgcagcgctcactctcgccaatgccgccaagcgccac
agtggactaagtttagtcgtaaccagcgatacagccagtgcccagcgcctggaatctgaa
ttggcttttttttccggcaaagatttgcaaattctccatctggccgactgggaaaccctg
ccttacgacagcatatcgccccatcaagacattatttcgcaaagattgcgcaccttgtat
caattgccgagtgtcactcaaggcattttagtggtgcccgtcaccagcctgctgcaaagg
ctgatgcccaaaacctacctgatgggcggcagccttatgttaaaagtcggggaagcgctt
aaccccgacaccctgcgagccaatctaacccaggccggctaccgcacggtagatactgtt
tatgagcacggcgagtacgccgtgcgcggctcgctgatcgacattttcccgatgggcagc
gaacaaccactgcgtatcgatttattcgacgacgaaatcgacactctgcgtacctttgat
ccagacacgcaaatgaccgcagataaaatcgaagcgcttgagttgctgcccgcgcgcgag
ttcccgctggataaaaatggcattagcgcgttcaagcagcgctggcatcagcgctttgac
acagatcccagcgcctgcagcgtttaccgcgacgtgggggacggcatcgcacctcctggt
attgagtactatctgccgctgtttttcgatcactgtgacacgctgtttgactacctaccc
caaaataccgtcgcctacacgctaggtgatatcaaccaggcatccgaacgttttctcagc
gagctgaaatcgcgctacgactcgcgcggcgtagaccctacccgcccgctgctaaaacca
gaggagatttacctgcgcgaagaagagctgttcgcagggctcaaaggtatcagtcgcacc
gcgctggcgagccatccactggatgatgccgccggcaatcgaaacttcagttttacacca
ccgccgtcactgccagtgcaagcgcaaagcgaacacccgttaacggcgctggaagcgttt
ctaatggagtttgacggccgggtactgttctgtgccgaatccgccgggcgccgagaaacc
ctgctggaattgttatctcgcatccgcgtaaaacccacagaattagatagctggcaaagt
tttagcgcgggcagcgaaaccctggctattaccgtaggcggtattgatcagggactcatt
tgcacctctcccaatctggctttaattaccgagagccagttatttggtgagcgggtacag
caaacccgccgacgccgccagagccaggaaaacgccgacaacgtcgtcaaaaaccttacc
gagctgcaagtgggcgcgcctgtagtgcatatcgaccacggcgtaggccggtatcgcggc
cttgaaaccattaccatcgaaaacgaaaccaacgaatttttaatgctggagtacgccgac
gaggcgaagctctacgtgcccgttaccagcttgcacttaatcagccgctacagcggggcc
gatgaaaacgtcgcgcccctgcacaagctgggctcggaggcctggggcaaagccaagcgc
aaagctgccgagcaagtgcgcgataccgccgcagaactgctcgacatttacgccaagcga
gcggcccgcaaaggcctcgcctttgacgaccccaaagccgattatttggccttttcagcg
ggcttcccctttgaagaaacgcccgatcagcagcttgccattgatgcggtggtcaaagac
atgctctcaccgcaaccaatggaccgactggtctgtggcgatgtgggttttggcaaaacc
gaagtcgccatgcgcgccgcctttgtcgccgcccacgggggtaaacaagtcgccattctc
gcccccaccaccctcctggcacagcagcattttgaatcgctcaaagatcgatttgccagc
tggccctttaccatcgaggtaatgtcgcggtttcgcaccagcaaagaagtcgatgcggtg
aaggagcgcctagccgaaggcaagattgatatcgtggtaggcacgcacaagctgattcag
ccagatatcaagtacaaagacctggggctactaatcatcgatgaagagcaccgctttggc
gtgcgccaaaaagaccagttaaaaaaactgcgcgccgagattgatattctgaccctcacc
gccaccccgattccgcgcacattaaacatgtctatggcgggtattcgcgatttatccatt
atcgccaccccgccggcgcggcgcttaagcgtcaaaacattcgtacgccagcacgacgat
gcgacgatcaaagaagcgattctgcgggagattttacgtggcggtcaggtgtactacctg
cataacgaagtaaaaagcattgagcgcaccgcgcgcgccttgcaagagctggtgcccgag
gcacgcatcggcataggccatggccagatgcgcgagcgcgagctggaaaaagtcatgtcg
gatttttaccataagcgcttcaacgtcatggtgtgcagtaccattattgaaactggcatc
gatatacccagcgctaacaccattattattcaccgcgccgacaagtttggcctggcgcag
ctgcatcagttgcgcgggcgcgtgggccgctcccaccaccaggcctacgcctatttgctg
acccccgaacgccgcgccatgaccagtgatgccattaagcgcttggaagccattgccagc
gctgaagaccttggggcaggttttaccctggccacccacgatatggaaatacgcggtgcc
ggggagttattaggcgacgaacaatccggacagattcagaccgtgggcttttccatgtat
atggatatgctggatcgagccgttaaagccctgcgctctggcaagcaacccaatatcgat
gcacctctagccgacaacattgacgtaaacctgcgcatacccgcgctgatccccgacgat
tatttacccgatgtacacacccgcttggtgctgtacaaacgcatagccggtgccgatagc
caggaggcattgcgcgagctgcaggtagagatgatcgaccgttttggtctgctaccggag
cagaccaaaaacctgctgcgagtcacggaaatcaaactcgccgccgaaaagttgggcatt
gttaagctcgaggcatccgcaggcggcggcaaagtcgagtttggccctgaagcaccaata
gacccactaaagattgtgcaaatggtacagagccagccacaggtattttcactggccggc
gccagcggtctgagctttaggatccctatgcccgacgccgaagaccgcttacaaagagtg
aacgaccttttggccagcctgcattaa
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