Gilvimarinus sp. DA14: NHM04_04390
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Entry
NHM04_04390 CDS
T08272
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
NHM04_04390 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gil03019
]
NHM04_04390 (rnc)
03009 Ribosome biogenesis [BR:
gil03009
]
NHM04_04390 (rnc)
03036 Chromosome and associated proteins [BR:
gil03036
]
NHM04_04390 (rnc)
Enzymes [BR:
gil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
NHM04_04390 (rnc)
Messenger RNA biogenesis [BR:
gil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NHM04_04390 (rnc)
Ribosome biogenesis [BR:
gil03009
]
Eukaryotic type
90S particles
RNase
NHM04_04390 (rnc)
Prokaryotic type
rRNA processing factors
NHM04_04390 (rnc)
Chromosome and associated proteins [BR:
gil03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
NHM04_04390 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
DSRM_2
Motif
Other DBs
NCBI-ProteinID:
UTF61044
UniProt:
A0A9J7A9H7
LinkDB
All DBs
Position
complement(1014615..1015295)
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AA seq
226 aa
AA seq
DB search
MSDILLTRLQQRLGYQFKDITRLQLALSHRSVGAANNERLEFLGDSIVNFLVGEALFEQF
PKAREGQLSRLRSQMVKGETLAELAREFELGECLSLGEGEMKSGGHRRDSILADAVEAII
GAIYLDSDMPSCRTRVLQWYDSRLQALSLENPAKDAKTRLQEYLQSRREPLPDYQVVAVA
GEAHAQMFTVECHVSLLDTPESARASSRRAAEKQSAAQALKRLGVS
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatattttactgacacgtctgcaacagcgcttgggttatcagtttaaagacata
acccggctacagctcgccctaagccatcgcagtgtgggtgcagcaaacaacgagcgattg
gagtttctgggggactcgattgtcaacttcctggtaggtgaagcgctctttgaacaattc
cccaaggcccgagaggggcaattgagtcgcctgcgctcgcaaatggtcaaaggcgaaacc
ctggctgagctggctcgtgagtttgagttgggcgagtgcctgagcttgggtgaaggcgaa
atgaaaagcggcggccaccgacgcgattcaattctggccgatgcagtagaggccattatt
ggtgctatttatctcgattcagatatgcccagctgccgcacgcgggtactgcagtggtac
gactcacgcttacaagccctgagtttggaaaacccggccaaagacgccaaaacccgcttg
caagagtatttgcaatccaggcgcgagccgctgccggattaccaggtggtggccgtggct
ggcgaggcacacgcgcaaatgttcaccgttgagtgtcatgtgtcgctgctagatactccc
gaaagtgcgcgcgccagcagtcgtcgcgccgccgaaaaacaatccgccgcgcaagcgctg
aagcgccttggggtcagttag
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