Gilvimarinus sp. DA14: NHM04_04820
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Entry
NHM04_04820 CDS
T08272
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03410
Base excision repair
gil03430
Mismatch repair
gil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NHM04_04820 (recJ)
03430 Mismatch repair
NHM04_04820 (recJ)
03440 Homologous recombination
NHM04_04820 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gil03400
]
NHM04_04820 (recJ)
DNA repair and recombination proteins [BR:
gil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NHM04_04820 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NHM04_04820 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NHM04_04820 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
UTF61127
UniProt:
A0A9J7AEN6
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Position
complement(1106265..1107995)
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AA seq
576 aa
AA seq
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MQKIIKRRPSPSSLLSEPDLAPLLNRIYSNRGVRHAEELELTLQRLLRPELKGLPEAAEI
LADAVVAGARILIVGDFDADGATSSALGVLALRAMGAQHVDFLVPNRFEYGYGLTPEIVA
VAAEREPDVIVTVDNGISSIDGVQAANDLGIAVVVTDHHLPGQALPAADAIVNPNQPGCS
FSSKNLAGVGVIFYVMNALKKQLSAIGWFAEAGIPEPNMANFLDLVALGTVADVVPLDAN
NRILVEQGLRRIRAGVARPGILALLEVAGRGRERLVATDLGFAIGPRLNAAGRLDDMSIG
IRCLLSDDVQLARELAAELDSFNRDRKAIESGMQREAMAMLDKLSVGDGQDLPWGLCLYD
ATWHQGVIGILASRVKDKFHRPVIVFADADDDTIKGSARSIPGLHIRDALDAVAAREPHL
LQKFGGHAMAAGMSIARENYQAFAEAFDTEVKRQLAADDLQAVLMSDGELAASEFELELA
RQLRHAGPWGQHFPEPLFDGEFYLVQQRIVGEKHLKLVLALDAQKQQLLDAIAFNVDLSV
WPDQGIERIRAAFKLDVNEFRGRESLQLMIDYLEPV
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaatcatcaaacgccgtccctccccctcatctttactatctgagcctgatctt
gcgcccttactgaatcgtatctactccaatcgcggtgtgcggcatgccgaggagctagag
ttaaccctacagcgcttgctgcgcccggagttaaaaggtttaccagaggctgctgaaatt
ctcgccgatgcggtagtggccggtgcgcgtattttgattgtgggcgactttgatgccgat
ggcgccaccagctctgcgctcggggtgttagcactgcgtgccatgggggcgcagcatgtg
gactttttggtgcccaaccgctttgagtatggttatggccttacgccggaaattgtagcg
gtcgcggctgagcgagagcctgatgtgattgttaccgtggataacggtatctccagtatc
gatggcgtacaggcggccaacgacctgggcattgcggttgtcgtcaccgatcatcacctg
ccgggtcaggcgctgcctgcggccgatgcgatagtcaatccgaaccagccgggctgctct
tttagcagtaaaaatcttgccggtgtcggtgtgattttttacgtaatgaatgcgttaaaa
aaacagctgagcgctataggatggtttgccgaggcgggaatccccgagccgaatatggcg
aactttctagatttagtggctctgggaaccgttgccgatgtggtaccgctggatgcaaat
aaccgtattcttgtggagcagggcttgcgtcgtattcgcgcgggcgtggcgcgcccgggc
atcctggcattacttgaagtggccggacgtggtcgcgagcgtttagtggcgactgatttg
ggttttgctataggcccgcgtttgaatgccgccggcaggttggatgacatgagcattggc
atacgctgcttgcttagtgatgatgttcaattagcgcgcgagctggcggccgagctagac
agctttaaccgcgatcgcaaagccattgaaagcggtatgcagcgcgaggccatggccatg
ctggataaactcagtgtcggtgatggtcaggacttgccctgggggctgtgcttgtacgac
gccacctggcatcaaggggtaatcggtattctcgcctcgcgggtgaaagacaaatttcac
cgcccggtgattgtgtttgccgatgccgacgacgatactattaaaggatcggcgcgctcc
atacccggcctgcacattcgcgacgctctggatgcggtggccgcacgcgagccgcacttg
ctgcaaaaatttggcggccatgccatggctgccggcatgagcattgcgcgggaaaactat
caggcttttgccgaagccttcgataccgaagttaagcgtcagctcgctgcagatgattta
caggcagtcctgatgagcgatggcgaacttgccgccagcgaatttgagctagagctggcg
cgccagttgcgacacgcgggcccttggggtcagcactttccagagccattattcgatggg
gagttttatctggttcagcagcgtatcgtgggggaaaagcacctgaaattggtgctggcg
ctggacgcgcagaagcagcaattgctggatgctattgccttcaatgtagatttgtctgtg
tggccggatcaaggtattgagcgcattcgcgccgcctttaaactggacgtcaatgagttt
cgcgggcgtgaatctttgcagctaatgatcgattacttagagccggtataa
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