Gilvimarinus sp. DA14: NHM04_05110
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Entry
NHM04_05110 CDS
T08272
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gil
Gilvimarinus sp. DA14
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gil03016
]
NHM04_05110 (rnd)
Enzymes [BR:
gil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NHM04_05110 (rnd)
Transfer RNA biogenesis [BR:
gil03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NHM04_05110 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
UTF61181
UniProt:
A0A9J7A7X3
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All DBs
Position
complement(1158747..1159889)
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AA seq
380 aa
AA seq
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MHIPTEPIWVDDDQTLHTLCQRWAQQAAIAVDTEFMRSDTFYPIAGLIQVGDGQGCYLID
PKAISDFTPLAELWRNPKVTKVLHACSEDLEVFSVLLNALPQPLFDTQVAAAFAGCGYSL
GYAALVRDLLAIEIPKGETRSDWLARPLSKAQTEYAALDVAHLLIVYGKLLRLLKEQGRL
DWVLAECYAQVEAAAGPLDLAQAYTKVGLGWKLPPRGVAALQSLCLWREQEARACNIPRN
RLLKEQPLYELARRLPDDYNGMRRIEGIPKRTLADHGDQLLGLLQVARDLPEDQLPPRMP
APLGREYGTAIKAMKAWVRERAEAVGLPPELLIRKKEYEYLVRTYAAGQIELPARLTGWR
YEVIGKGLLEVASNALGGKS
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgcacattcctaccgaacccatttgggtagacgacgatcaaaccttgcacactctgtgt
cagcgctgggcgcaacaggccgcgattgcggtggataccgagtttatgcgcagcgatacc
ttttatcccatcgccgggctgattcaagtgggcgatggccagggctgttacctgattgac
cccaaagctattagcgactttaccccgttggcagagttgtggcgcaaccctaaagtgacc
aaagtgctgcacgcctgctcggaagatttagaagttttctcggtgctactcaacgcttta
ccgcagccactttttgacactcaagtggcggccgcttttgccggttgcggttattcattg
gggtacgccgccttggtacgggacttattagcaatagaaatacccaagggcgaaacccgc
tccgattggctggcgcggcccttgagtaaggctcaaaccgagtatgccgcgctggatgtg
gcgcatttgctaatcgtatacgggaaattgctaagactgttaaaagaacagggccggctc
gattgggtgctggccgagtgctatgcccaggttgaagccgcagccgggcctttggacttg
gcgcaggcctataccaaggttggcttgggctggaaactgccgccgcgtggcgttgcggcg
ctgcaaagcctttgcctgtggcgcgagcaagaggcccgagcttgcaacataccgcgtaat
cgattgttaaaagagcagcctttgtacgagcttgcgcgtcgcctgccggatgattacaac
ggcatgcggcgcatagagggcattcccaaacgcactctggccgatcatggcgaccaactg
ctggggcttttgcaagtcgcgcgcgatttgcccgaggatcagctgccgccgcgcatgccc
gcgccgctgggacgcgaatacggcaccgcaataaaagccatgaaggcctgggtacgcgaa
cgtgcagaagcggtgggcttgccgcccgagctgctgattcgcaaaaaagaatacgagtat
ttagtgcgcacttatgccgcaggtcagatcgagctgcccgcaaggctcaccggctggcgc
tatgaggttattggcaaaggcttgttagaggttgcctctaacgcgctgggaggaaaatcg
tga
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