Gilvimarinus sp. DA14: NHM04_05460
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Entry
NHM04_05460 CDS
T08272
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gil
Gilvimarinus sp. DA14
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gil03032
]
NHM04_05460 (topA)
03400 DNA repair and recombination proteins [BR:
gil03400
]
NHM04_05460 (topA)
Enzymes [BR:
gil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NHM04_05460 (topA)
DNA replication proteins [BR:
gil03032
]
Prokaryotic type
DNA Topoisomerases
NHM04_05460 (topA)
DNA repair and recombination proteins [BR:
gil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NHM04_05460 (topA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
HVO_2753_ZBP
DUF7340
Toprim_4
Zn_ribbon_recom
DNA_ligase_ZBD
Zn_ribbon_3
Toprim_2
DUF7575
Motif
Other DBs
NCBI-ProteinID:
UTF61247
UniProt:
A0A9J7AF30
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Position
complement(1229570..1231528)
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AA seq
652 aa
AA seq
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MNLVIVESPGKVKKISQILGSGWEVQASVGHVRDLPEKEMGVEAPEYRPKYVPTTRGKDV
LAKLRKAVQRADEVYLATDMDREGEAIAWHLQQALKLKEPKRIVFSEITAKAIKAAISKP
GKINYRRVAAQEGRRVLDRLVGYRVSPKLGDVTKQRGLSAGRVQSPAVRIVADRERAIQA
FVTTDHYGARWNLGGWFADWDAKPFLLEGQEYLLDRSLAEWVANVTEASVIACEETQESK
APPAPFITSTLQQAASSRLKMKPKATMAAAQKLYEQGHITYMRTDTPNLSEEAFAQIQDY
GRANGLPVVDRQRTWKAKGDAQEAHEAVRPTHIDLVEAGETSDQQQLYKLIWQRTLASQL
QAAKYAVRTVKLRAGEQLQGKPVECVTKGRTELNPGWKTVYADDAPASKQDPEEAANPVP
KLQEGQLVNIAEGKVLDKRTKPPSRFTEAQLIKELEKQGIGRPSTYAAIMENIMSRGYVT
YDSAGKYLVPTDTGYLVVDCLVASRFSFIELDFTKSIEAQLDEVAEGRAGYKGVIATLDN
RLTAELTNMDTVKVEVPAGMNHPCPECGEQLTRRPGKSSKKAWWGCSGYPECKVTLPDKN
GKPGKPKEREVSETPCPKCGKELVRRKKGGKSGYDFWGCSGFPKCDGRINNE
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgttatcgtcgagtcacccggtaaagtcaaaaagatcagtcagattcttggt
tcaggctgggaagtccaggccagtgttggtcatgttcgggaccttcccgagaaggaaatg
ggcgtagaagcaccagaataccggccaaagtacgtgcccacgaccaggggtaaagatgtt
ctggccaaactcagaaaggccgtacagcgcgccgatgaggtgtatctggcaacggatatg
gatagggaaggggaggccattgcctggcatctgcagcaggctctcaaactcaaggagccc
aagcggattgtcttctcagagattacggcaaaagccatcaaagcagcgatcagtaagcct
ggaaagatcaattaccgtcgtgtagctgcccaggagggccgtcgcgtcctggataggctc
gtgggttaccgggtatcacccaagctcggagatgtgaccaaacagcgaggcctctccgca
ggcagagtgcagtcaccggccgtgcgcatcgttgctgatcgtgaacgagccattcaagcc
tttgtcaccacagatcactatggtgcacggtggaatctcggtggctggtttgctgactgg
gacgccaagccgttcctcctggaggggcaggaatacctgcttgaccgctccctggccgaa
tgggtggcaaatgtcacggaggcgtctgtaatcgcttgtgaggagactcaggagtccaag
gcacctccagcaccgttcatcacctctacgctgcagcaagcggcctccagccgcctcaag
atgaagccgaaggccacaatggccgccgctcagaagctctacgaacaaggccacatcacc
tacatgcgaactgacacacccaatttatcagaggaggcgttcgcacagatccaggattac
ggccgagcgaatgggttgcccgtcgtcgatcgtcaacgcacttggaaagccaaaggtgac
gcccaggaggcgcacgaagccgtccggccgactcacattgacctggtcgaagctggcgag
acctcggatcagcaacagctgtataagctgatctggcagcgtaccttggcctcgcagctg
caggcagccaaatacgcggtgcgcacggtcaaactccgtgccggcgagcagctgcagggt
aagcccgtcgaatgtgtgaccaaaggccgtaccgagctcaatccgggctggaagacggtc
tatgccgacgatgcgccggcgtctaaacaagaccctgaggaagcggccaatccggtaccc
aagctgcaggagggccagctggtcaacattgctgagggcaaagtcctggataagcgtacc
aagccaccttcgcgcttcaccgaggcacagctgatcaaagagctggagaagcaaggtatt
ggccgaccatcgacctacgccgcgatcatggagaacatcatgtcccgcggatatgtcact
tatgactcggccggcaagtaccttgtaccgaccgatactgggtacctggtggtcgactgc
ctggtcgccagtcgtttcagttttatcgagctggatttcacaaagtccattgaggcccag
ctggacgaggtcgcggaaggtcgcgccggctacaagggtgtgatcgcgactctggataat
cgattgaccgccgagctcaccaatatggatacggtcaaagtcgaggtgccggccggaatg
aatcacccgtgcccggagtgcggggagcagctgactcgccgcccgggtaaatccagcaag
aaagcctggtggggttgctctggctaccctgagtgcaaagtgactctgccagacaagaat
ggtaagccaggcaaacctaaagaacgggaagtgtctgaaacaccttgcccgaaatgcggg
aaggagctggttcgccggaagaaaggcggcaagtccggctatgacttttggggttgtagt
ggatttccgaaatgtgatgggaggataaataatgagtga
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