Gilvimarinus sp. DA14: NHM04_07215
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Entry
NHM04_07215 CDS
T08272
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHM04_07215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gil03019
]
NHM04_07215
Enzymes [BR:
gil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NHM04_07215
Messenger RNA biogenesis [BR:
gil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NHM04_07215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
HI1480
ERCC3_RAD25_C
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UTF61575
LinkDB
All DBs
Position
complement(1627262..1628671)
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AA seq
469 aa
AA seq
DB search
MIFAELGLSPEIQQAVAEQGYDTPTPIQAQAIPAVLKGQDVMAAAQTGTGKTAGFTLPML
ERLCQSAGGKRPPGNQVRALVLTPTRELAAQVGDNVAQYSRYVPIKSTVVFGGVKINPQM
MRLRGGVDILVATPGRLLDLYQQGAVKFDALEILVLDEADRMLDMGFIHDIRKIMALMPS
KRQNLMFSATFSPEIRQLAKTIVHNPVEITVNPPNSTATRVKQWIYPVDKKEKTSLLIEL
IKTNNWHQVLVFSRTKHGANKLVKQLDAAGLKAAAIHGNKSQGARTRALADFKANKVRIL
VATDIAARGVDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGAAVSLVSADEFDMLSE
IERLIKTILPREFIVGFEPQHALPESSLEKRGARNNRSRSGNPRNKKPSGNKPKKPSQGR
NKNTDSGKPEAKNNDGKPAAKKSFWQKKKAGNGGGKVKPFARQGGEGKK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgatctttgccgaacttggcctttcccccgaaatccaacaagccgttgccgaacagggc
tatgacaccccaacacccattcaggcccaggcgattcccgccgtattaaaaggtcaggat
gtgatggccgccgcccagacgggtaccggtaaaaccgccggctttaccctgcccatgctc
gagcgcttatgccaaagcgcaggtggcaaacgcccgccgggtaatcaggtgagagccctg
gtgctgaccccaacgcgtgaattggccgcgcaggtcggggacaatgtggcgcagtacagt
cgctatgtgcctattaagtccacggtggtgtttggtggggtaaagattaatccgcagatg
atgcgcctgcgcggcggtgtggatattctggtggccacccccggacgcctgctggatttg
tatcagcagggtgcggttaaatttgatgcgttggaaattctggtgttggatgaagccgac
cgtatgctggatatgggctttattcacgatatccgcaaaattatggcgctgatgcctagc
aagcggcaaaacctgatgttctcggctaccttcagccccgagattcgccagctggccaag
actattgtgcataacccggtagaaattaccgttaatccgcccaacagtaccgcgacccgg
gttaagcagtggatttatccggtagacaaaaaagaaaaaaccagtttgttgattgaactg
attaaaaccaacaactggcatcaggtgttggtgttttcccgcaccaagcacggcgctaac
aaattagtgaagcagctggatgccgctggtttaaaggctgcagcgattcacggcaataaa
agtcagggggcacgtacccgcgcgctggccgattttaaagccaataaagtgcgtattctg
gtggccacggatattgccgcacgcggcgtggatattgaccagctgccccaggtggtgaac
tttgatttaccgcaggttgcggaagattatgtacacagaatcggccgcaccggtcgcgct
ggcgccgagggcgctgctgtgtcattggtaagtgctgacgagttcgatatgctcagtgaa
attgagcggttgattaaaaccatcttgccgcgtgagtttatcgtcggttttgagccgcag
cacgccttacccgaatccagtttggaaaaacgcggcgcgcgcaataatcgctcgcgcagt
ggtaacccgcgcaataaaaaaccatctggtaataagcctaaaaaaccttcgcaagggcgc
aataagaataccgactctggcaagccagaggcaaaaaataatgatggaaagcctgccgcc
aaaaaaagcttttggcagaaaaagaaagcaggcaatggtggcggaaaagtaaaacctttt
gcccgccagggtggggaaggaaaaaaatag
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