Gilvimarinus sp. DA14: NHM04_11925
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Entry
NHM04_11925 CDS
T08272
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03030
DNA replication
gil03410
Base excision repair
gil03420
Nucleotide excision repair
gil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NHM04_11925 (polA)
03410 Base excision repair
NHM04_11925 (polA)
03420 Nucleotide excision repair
NHM04_11925 (polA)
03440 Homologous recombination
NHM04_11925 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gil03032
]
NHM04_11925 (polA)
03400 DNA repair and recombination proteins [BR:
gil03400
]
NHM04_11925 (polA)
Enzymes [BR:
gil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NHM04_11925 (polA)
DNA replication proteins [BR:
gil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NHM04_11925 (polA)
DNA repair and recombination proteins [BR:
gil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NHM04_11925 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHM04_11925 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UTF59183
UniProt:
A0A9J7A8U5
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All DBs
Position
2727699..2730425
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AA seq
908 aa
AA seq
DB search
MTDQSPVVLVDGSSYLYRAYHALPPLTNSRGEPTGAVKGVINMIRRLLKDYPGSPVAVVF
DAKGKTFRDELFAEYKAQRPPMPDDLRPQVEPIHEIVKAMGLPLLIEEGVEADDVIGTLA
AQAKEDGRPVVISTGDKDMAQLVNHRVTLVNTMTGSLLDEDGVREKYGFGPELMIDFLAL
MGDKVDNIPGVPGVGEKTAKALLQGVGGLDALYDNLEAIRELDFRGAKKMPEKLQDNKDQ
AYLSYELATIRLDVPLHVSVDEIALGEPDNDKLLALFERMEFKTWVDELAADPSVDSPVT
KPAEEVSVHYDTVLEKPEFDTWLQHLKDADYFAFDTETTSLHAMEAQIVGVSFAVEPGKA
AYVPVAHDYLEAPEQLDRDWVLAQLKPLLEDAGKAKVGQNLKYDRNVLANHGITLRGIAW
DTMLESYVFNSVAGRHDMDSLAQRYLDTSTIHFEDIAGKGAKQLSFNQIKVEDAAPYAAE
DADITLRLHRKLWPEIENDESLRRVLLDIEMPLVPVLADIERTGVLIDAAQLGKHSKELA
ERLVALEREAFDIAGKEFNLSSPKQLGVILFEELELPVVKKTKTGAPSTAEDVLQELALD
YPLPKLILEYRSLAKLKSTYTDKLPKMINPQSGRVHTSYHQAVAATGRLSSADPNLQNIP
IRTEEGRRIRKAFVAPKGYKVLAADYSQIELRIMAHLSKDEGLLHAFAEGLDVHRATAAE
VFATELDKVTDEMRRRAKAINFGLIYGMSAFGLGKQLGLPRNEAQGYIDRYFERYPGVAR
YMDETRALAHEKGYVETLQGRRLYLPEINARNKMLQQAAERTAINAPMQGTAADIIKLAM
VNVANWLADSDLDARIVMQVHDELVLEVAEKDANQVREGLIERMSQAAELTVPLIVEAEV
GDSWDEAH
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcagtcccctgtcgtccttgtggatggctcttcttacctctaccgcgcctac
catgcgctgccacctctgacgaactcgaggggcgagcccactggcgcggttaagggcgtt
attaatatgattcggcgtctgcttaaggattaccccggcagcccagtggctgttgttttt
gacgccaagggcaagacctttcgcgacgagttgtttgccgagtacaaggctcagcgccca
cccatgcccgatgatttgcgtccgcaagtggagcctattcacgaaattgttaaagccatg
gggctgccgctgttaatagaagaaggggtagaggcggacgatgtgatcggtactctggcg
gcgcaggctaaagaagatggccgcccggtggtgatctcaaccggcgataaggatatggcg
cagctggtgaatcatcgcgttaccctggtcaataccatgaccggaagcctgttggatgag
gatggtgttagagagaagtacggcttcggccccgagttgatgatcgattttctcgccctg
atgggcgacaaagtcgacaatattccaggggttccgggtgtaggggagaaaaccgccaaa
gccctgttacagggagttggtggcctggacgcgctttacgacaatttagaggctattcgc
gagctggacttccgcggcgcgaagaaaatgcctgagaagctgcaagacaacaaagatcag
gcttacttgtcttatgagcttgccaccattcgactggatgtccccttgcatgtaagcgtg
gatgagattgccctgggcgagcctgacaacgacaaactgttggccttatttgagcggatg
gagtttaaaacctgggtagatgagttagccgctgacccgtctgtagattcaccagttaca
aagcctgccgaagaggtgagtgttcactacgacaccgttttggagaagcccgagttcgac
acttggctgcaacatttaaaagacgccgattactttgcctttgataccgaaaccaccagc
ctgcacgccatggaggcgcagattgtgggtgtttcgtttgcggtagagcccggcaaggcc
gcctatgtgcccgtggcgcacgattacttagaggccccggaacagttagatcgcgactgg
gttctggctcaacttaagcccttattagaggacgctggtaaggccaaggtggggcaaaat
ctgaagtacgatcgcaatgtgctggccaatcatggcattaccctgcgcggaattgcctgg
gacaccatgctagagtcctatgtctttaactccgtggccgggcgtcacgatatggactcg
cttgcccagcgttacctggataccagcaccatccattttgaagatattgccgggaaaggt
gccaagcagctcagttttaaccagattaaggtcgaggacgcagcgccctacgccgctgaa
gatgccgacattaccctgcgtttgcaccgcaaactctggcctgagattgaaaacgacgaa
tccctgcgacgggtacttttggatattgaaatgccgttagtgcctgtgcttgccgatatt
gaacgcaccggggtgctgattgatgcggcgcagctgggcaagcatagcaaagagctggca
gagcgcctggttgccctcgagcgtgaagcctttgatattgccgggaaagaattcaattta
agttcgcccaagcagttgggggtgattctgtttgaagagctggagctaccggtggtgaaa
aaaaccaaaaccggtgcgccctctaccgccgaggatgtattgcaagagctggcattggat
tacccgctgcccaaactcattttggaataccgcagcctggcgaagttgaagtccacctac
accgataaattgccgaaaatgattaatccgcagagcgggcgggtacatacctcttaccat
caggcggtggcggccactgggcgattgtcgtcagccgatccgaacctgcagaatattcct
attcgcaccgaagaggggcggcggatccgcaaggctttcgtcgcacctaaaggatacaag
gtgctggcggcggactattctcagattgaattgcggattatggcgcatttgtcaaaagac
gagggcttgctgcacgcctttgctgaaggtttggatgtgcaccgggcgacggccgccgag
gtatttgccaccgagctcgacaaggtgaccgatgaaatgcgccgccgtgctaaggccatt
aacttcggccttatttacggtatgtctgcttttgggttgggcaaacagctggggttgccg
cgcaacgaggctcagggttatatcgaccgttatttcgagcgctacccaggagtggcacgc
tatatggacgagacccgtgccttagctcatgaaaagggttatgttgagacactgcagggg
cggcgtttgtatctgccggaaattaatgcccgcaataaaatgctgcaacaggccgccgag
cgcactgcaatcaacgcccccatgcagggcacagcggcggatatcattaaacttgccatg
gtgaacgtagcaaactggctagctgacagtgatctggatgctcgcatcgttatgcaggtg
cacgatgagctggtactggaagtggctgaaaaagatgcgaatcaagtgcgcgagggatta
attgaacgcatgagccaggcggcagagctaaccgtgccactgattgtcgaagcggaagtc
ggagatagctgggatgaggcgcattaa
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