Gilvimarinus sp. DA14: NHM04_13260
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Entry
NHM04_13260 CDS
T08272
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NHM04_13260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gil03021
]
NHM04_13260 (rpoC)
03400 DNA repair and recombination proteins [BR:
gil03400
]
NHM04_13260 (rpoC)
Enzymes [BR:
gil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NHM04_13260 (rpoC)
Transcription machinery [BR:
gil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NHM04_13260 (rpoC)
DNA repair and recombination proteins [BR:
gil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NHM04_13260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UTF59429
UniProt:
A0A9J7A3N3
LinkDB
All DBs
Position
3035554..3039780
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLNLLKSQGQTEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTDPGMTTLERGQLLTDEQYFESMEEFGDEFEALM
GAEAIKALMSDINLEEEIQYLREEIPNTNSETKIKKFSKRLKLLEAFYYSGNNPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYWMTRERINAKGEGMVFADVAEVSRAYYGH
QVDLQARVKVRIDETIIGSEGEKQATKRLVETTVGRVLLWEIVPEGIPFEMIDRAMVKKA
ISAVINHCYRAVGLKATVIFADRLMYMGYDFSTKSGSSIGVNDFAIPDEKYEIVARAEEE
VKEIESQFASGLVTAGEKYNKVIDIWSRANDLVAKSMMDGISFESVINRDGEEEQQTSFN
SVYMYADSGARGSPAQIRQLAGMRGLMAKPDGSIIEAPITANFREGLNVGQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTMADCGTDEGLEMAPVIEGGDVIESLGDRIL
GRVVARDVVRPNSDEILVPAGTMIDEAWVERIEGMGIDEVLVRSPITCDARTGICSMCYG
RDLARGHRANKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAADNVQVKQEGTIRL
INIKVVTNKDGNLVAVSRSGELAVADAQGSERERYKIPYGAVISVKDGEQVDGGQIVAKW
DPHTHPIVTEVAGKVNFSGMEDNLSVRRQTDELTGLSSIEVMDPSERPSAGKDMRPAITL
TDEAGNELCLPNTTMPAHYLLPAHAILSIADNDTIEVGDVLARIPQEGSKTRDITGGLPR
VADLFEARKPKEPSILAEISGTVSFGKETKGKRRLVITPNDGQPLEDGSTHYEVLIPKHR
QLTVFEGEQVVKGEVVSDGPSNPHDILRLKGVEALASYITNEIQDVYRLQGVKINDKHIE
TIVRQMLRKVEITGMGDSSFVKGEQVEYTNVLAENERLRAEDKQPAKFERLLLGITKASL
ATESFISAASFQETTRVLTEAAVTGKKDSLRGLKENVVVGRLIPAGTGLAYHTERKRKRE
EALEYADTGVSAEDVEAALTEALKSSGE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttacttaatctgctcaagtcccagggacaaactgaagaatttgacgcgatt
cgcatcggcctggcatcgccggaaatgattcgctcttggtcgtttggtgaagttaaaaag
cccgagaccattaactaccgtaccttcaagccagagcgcgaaggcttgttctgtgccaaa
atttttggtccggtaaaagactacgaatgcttgtgcggtaagtacaagcgcatgaagcat
cgcggcattatctgtgaaaaatgcggcgttgaagtgaccttggcgaaggtgcgtcgtgag
cgcatggggcatattgaattggcctcgccggttgcgcatatctggtttttgaaatcactg
ccaagccgtattggcttgctgctggatatgaccctgcgtgatattgagcgcgtgctgtat
ttcgagtcttatgtagtgaccgatccgggtatgactaccctggagcgcggccagctgctg
accgatgagcagtactttgaatcgatggaagagttcggcgatgagtttgaagcgctgatg
ggcgccgaggcgattaaagcgctgatgtcggatatcaacctcgaagaagaaattcagtac
ctgcgcgaagaaattccgaataccaattcggaaaccaaaattaaaaagttctccaagcgc
ttaaagctgctggaggctttctactactcgggcaacaacccagagtggatggtgatggaa
gtgctgccggtattgccaccggatttgcgtccgctggtaccgctggacggtggccgcttt
gcgacctctgatctgaacgacttgtatcgccgcgttatcaaccgtaataaccgcttgaag
cgccttttggatctgaacgctcctgacatcatcgtgcgcaacgaaaagcgtatgctgcag
gagtctgtagatgcgctgttggataacggtcgtcgcggtcgtgcgattaccgggtccaac
aagcgtccgctgaaatctttggccgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgttgggtaagcgtgtggactactccggccgttcggtaattgtggttggtcccacc
ctgcgcctgcatcagtgtggtctgcccaagaaaatggcattggagctgttcaagccattt
attttcagcaagctggaactgcgcggcctggccactaccattaaagcggccaagaaaatg
gtcgagcgcgaagaagccgtggtatgggatattctcgatgaagtgattcgcgaacaccct
gtattgctgaaccgcgccccgactttgcaccgtttgggtattcaggcgtttgagccggta
ctgattgaaggtaaggctatccagctgcacccgttggtgtgtgcggcctataacgctgac
ttcgacggtgaccagatggccgttcacgttccgctgacgcttgaagctcagctggaagcg
cgtgcgctgatgatgtccaccaacaacattctgtcgcctgcctctggtgagccgattatt
gtgccctcgcaagacgtggtactgggcttgtactggatgacccgtgagcgtattaacgcc
aagggtgaaggcatggtgttcgccgatgtggcggaagtatcccgtgcttactacggccat
caggttgatctgcaagcgcgcgttaaagtgcgtatcgatgaaaccatcatcggcagtgaa
ggtgaaaagcaggccactaagcgtctggtagaaaccactgtaggtcgtgtactgctgtgg
gagatcgttcccgagggtattcccttcgagatgatcgaccgcgccatggtgaaaaaggca
atctctgcggttattaaccactgctaccgcgccgtgggcctcaaggcgaccgttattttt
gctgaccgtttgatgtacatgggttacgacttctccaccaagtcgggctcgtccatcggt
gtaaacgactttgcgattcccgatgaaaagtacgaaattgtcgcccgcgccgaagaagaa
gtgaaagaaattgaaagccagtttgcttcaggtttggtaaccgctggtgagaaatacaac
aaagtcatcgacatctggtcgcgcgctaatgacttggtggccaagtcgatgatggacggt
atcagttttgagtctgtgattaaccgcgacggcgaagaggagcagcaaacctccttcaac
tcggtttacatgtacgccgactcaggtgctcgtggtagcccggcgcagattcgtcagctg
gcgggtatgcgcggtctgatggccaagccagatggctctattattgaagcgcctattacc
gcgaacttccgtgaaggtctgaacgttggtcagtactttatttcgactcacggtgcgcgt
aaaggtctggccgataccgcactgaagaccgcaaactccggttacctgactcgtcgtctg
gtggacgtggcgcaggatctggttgttaccatggctgactgtggtaccgacgaaggtctg
gaaatggcgccggtgattgaaggcggcgacgtgatcgaatccttgggtgaccgtattctg
ggtcgcgtagtggctcgcgatgtcgtgcgtcctaactctgacgaaatcctggtgcccgcc
ggtaccatgattgacgaagcttgggtggagcgtattgaaggcatggggattgacgaagtg
ctggtgcgctcgccaattacctgtgatgcccgtaccggcatctgctcaatgtgctacggc
cgtgacctggcacgtggtcatcgcgctaacaaaggtgaagccgtgggtgttatcgccgcg
cagtcgatcggtgagcccggtacccagctgaccatgcgtaccttccacattggtggtgcg
gcttcgcgtgcttctgcggcagacaatgttcaggttaagcaggaaggtactatccgcctg
attaacatcaaagtcgtgaccaacaaagacggcaacctggtggcggtatctcgctccggt
gagctggcggtggccgatgcccagggcagtgagcgtgagcgctataagattccttacggt
gccgtgatctctgttaaagatggcgagcaggtcgatggtggccagattgttgccaagtgg
gatccgcatactcacccaatcgtcaccgaggtggcgggtaaggtgaacttctcgggtatg
gaagataacctgtcggtacgtcgtcaaactgacgagctaaccggtctgtcgtctatcgag
gtaatggatccatccgagcgtccgtcagctggtaaggatatgcgtcctgccatcaccttg
accgacgaagcgggtaacgagctgtgcttgcccaataccaccatgcccgcgcattatttg
ctgccggctcatgcgattttgagcattgcagataacgacaccattgaggtgggtgatgta
cttgcccgtattcctcaagagggttcgaaaactcgcgatattaccggtggtctgccccgc
gtggccgacttgtttgaagcgcgtaagccgaaagagccgtctatcttggcggaaatctca
ggtaccgtgagctttggtaaagaaaccaaaggcaagcgtcgtttggtgattactccgaac
gatggccagccgctggaagatggctctacccactacgaagtgctgattcctaagcaccgt
cagctgactgtgtttgaaggtgagcaagtagtgaaaggtgaagtggtatcggatggtcca
tctaacccgcatgacatcttgcgcctgaaaggtgttgaggctctggcgagctacatcacc
aacgaaattcaggatgtataccgtctgcagggtgtgaagattaacgataagcacatcgaa
accatcgttcgtcagatgctgcgcaaagtcgaaattaccggaatgggtgattccagcttt
gtgaaaggtgagcaggttgagtacaccaacgtgctggctgaaaacgagcgtctgcgcgct
gaagacaaacagcccgccaagttcgagcgtttgctgctgggtattaccaaggcctcgctg
gcgaccgagtcgtttatctcagcggcctcgttccaggaaaccacccgcgttctgaccgaa
gcggcggttaccggcaagaaagattcactgcgcggcttgaaagagaacgtggtagtgggt
cgtttgattcctgccggtactggtttggcttatcacaccgagcgcaagcgcaagcgtgaa
gaagctctggaatacgccgatactggtgtgagcgctgaggatgttgaagcggcactgacc
gaggcgttgaaatccagcggcgagtaa
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integrated database retrieval system
