Gilvimarinus sp. DA14: NHM04_15100
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Entry
NHM04_15100 CDS
T08272
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NHM04_15100 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gil03021
]
NHM04_15100 (rpoD)
Transcription machinery [BR:
gil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NHM04_15100 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
VP1_protrusion
TMPIT
ERM_helical
Motif
Other DBs
NCBI-ProteinID:
UTF59778
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Position
complement(3439159..3440967)
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AA seq
602 aa
AA seq
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MADDAKQQQSRIKELIARGKEQGYLTYSEVNDHLPEDISDPDQVEDIIQMINDMGIRVFE
QAPNADDLLMADGDSSADEIAAAEAAAALAAVETEAGRTTDPVRMYMREMGTVELLTREG
EIAIAKRIEEGVRELMHAISYWPGSVQQVIDEYELVEKEERRLADVIIGWLDPSDEIPTA
GAAPSKNDDSDDDEEESTSGVDPEEAKERFGALKKQLAKAEKAAEKHGRDSKQAEKELNA
LGEIFKFFKLPPRQFDPIYINVRSILDRARQEERAIMELCVRRAKMPRKTFVKEFPGNES
NDEWIAEIIKKKRDYSEALKPYEAEITRAQRKLQQVEEDSGLSLAAIKDINRRMSIGEAR
ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERMEMPE
DKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIVSPVESATSIGLTESTREVLAGL
TAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFL
DE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgacgctaaacagcaacagtctcgcatcaaagagctcattgctcgaggtaaa
gaacagggctacctgacctactccgaggttaatgaccacctgcccgaggacatctcagat
cccgatcaggtcgaagacatcatccaaatgatcaacgacatgggtatccgcgttttcgaa
caggcgcccaatgccgatgatctgttgatggccgacggcgattcctccgcggatgaaatt
gccgctgccgaggccgctgctgccctggccgccgtagaaaccgaggcaggccgtactacc
gacccagtgcgcatgtacatgcgtgaaatgggcaccgtagagctgctcacccgcgagggc
gaaatcgccattgccaagcgcatcgaagaaggtgtgcgcgagctgatgcacgccatttca
tactggccgggctcggtacagcaggtcattgacgaatacgaactggtggaaaaagaagag
cgccgcctcgccgatgtgattatcggctggctcgatccttctgatgaaattcctaccgct
ggcgccgcgccgtcgaaaaacgacgacagcgacgacgacgaagaggaaagcacttctggg
gtagacccggaagaggccaaagagcgctttggcgcgctgaaaaagcagctggctaaagcc
gaaaaagcggccgaaaaacacggccgtgacagcaagcaggccgagaaagaactgaacgcc
ctgggcgagatttttaaattcttcaaactgccgccgcgccagttcgaccccatttacatc
aacgtacgcagcattctcgatcgcgcccgtcaggaagagcgcgcgattatggaactgtgt
gtacgtcgcgcgaaaatgccgcgcaagacctttgttaaagagtttcccggtaacgagtcc
aacgacgaatggatcgcggaaatcatcaagaaaaagcgcgattactcagaagcacttaag
ccctatgaggcagaaatcacccgtgcccagcgcaagctgcaacaggttgaagaagacagc
ggcctgagcctggccgccatcaaagacatcaaccgtcgcatgtccattggcgaagcccgc
gcgcgccgcgccaagaaagaaatggtcgaggccaacctgcgcctggtaatttctatcgcg
aaaaagtacaccaatcgtggcctgcagttcctcgatctgattcaggaaggcaacatcggt
ttgatgaaagcggtcgacaaattcgaataccgccgcggttacaagttttcaacctatgct
acttggtggattcgtcaggccattacccgctccattgcggaccaggcccgcaccatccgt
attccggtgcacatgatagagaccatcaacaagctgaaccgtgtgtcacgccaaatgctg
caggaaatgggtcgcgaacccacccccgaagagctgggcgagcgcatggaaatgccagaa
gacaaggtgcgtaaggttcttaaaattgccaaagagcccatctcgatggaaacccccatc
ggcgacgatgaagactctcacctgggcgactttattgaggacaccaccattgtttcgccc
gtggagtcagctaccagcatcggcttgactgagtccactcgcgaagtgttggcaggcctg
accgcacgtgaagcaaaagtactgcgcatgcgtttcggtatcgatatgaacaccgaccac
accttggaagaagttggcaaacagttcgacgtaacccgtgagcgtatccgtcagatcgaa
gccaaggcattgcgcaaactgcgccacccttcgcgctccgaccacttgcgcagctttttg
gacgaataa
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