Gilvimarinus sp. DA14: NHM04_15750
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Entry
NHM04_15750 CDS
T08272
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHM04_15750 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gil03019
]
NHM04_15750 (recQ)
03400 DNA repair and recombination proteins [BR:
gil03400
]
NHM04_15750 (recQ)
Enzymes [BR:
gil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NHM04_15750 (recQ)
Messenger RNA biogenesis [BR:
gil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NHM04_15750 (recQ)
DNA repair and recombination proteins [BR:
gil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NHM04_15750 (recQ)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
HTH_40
RecQ_Zn_bind
HTH_20
HTH_IclR
HTH_7
ResIII
GerE
HTH_5
HTH_23
HTH_28
TrmB
HTH_35
Motif
Other DBs
NCBI-ProteinID:
UTF59906
UniProt:
A0A9J7A4I2
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All DBs
Position
3594911..3597061
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AA seq
716 aa
AA seq
DB search
MNPTALHTLQTTFGYDAFRGQQAEIIDTVINGKDALVLMPTGGGKSLCYQIPALVRQGVA
IVVSPLIALMQDQVDALAQLDISAAYLNSSLSLEEVRAVEQGLVSGEIKILYVAPERLIQ
PRTLDLLHRLPVSLFAIDEAHCVSQWGHDFRSDYLQLSLLHQQFPQVPRVALTATADERT
RAEILSRLQLEGAAQFVSGFDRPNIQYRIEQKQNARQQLLRFLHNEHPQDAGIVYCLSRR
KVEETAAWLSVQGYTALPYHAGLPAATRQQNQERFLREDGVIVVATIAFGMGIDKPDVRF
VAHLDLPKSLESYYQETGRAGRDGQPATAWMAYGVQDVIKLKQMLSQSQGTDEHKRLEHH
KLDAMLGLCEITSCRRQALLSYFGEQDHPDCNNCDTCLSPPETFEGTVAAQKALSVCYRT
GQKFGVNHLIDVLLGKATDKVTQFGHEKLSTFAIGDELDANQWRSVFRQLVARGLMQVDV
AGYGGLMLTEKCRPLLKGESHIQLRKDTKVENGRKSRSGQAASGLTGPDRALWDRLRELR
KRLAAEQDIAPYMIFHDAHLMEMVSLQPQDLEAFARISGVGASKREHYGDAFVEAITEHV
QSLADYAGSAANVKATEHETFALFKAGMTVADIARQRDITETTVYGHLAGLIEQGQLDVA
EVVELPEQELDAIFDVMLAHDDEPFKLKPVYEALDGAYDYGVLRCIRAVIVRETAN
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaacggccctccacactctgcaaaccaccttcggctatgacgcgtttcgcggt
cagcaagccgagattatcgacactgtgatcaacggcaaagacgcgctggtgcttatgccc
accggtggtggcaaatcgctgtgctaccagataccggcgctggtgcgtcagggggtggca
atagtggtctcgccgctaatcgcgttgatgcaggatcaggtggatgccctggcgcagctg
gatatcagcgccgcctatttaaactccagtctcagtctggaggaggtgcgggcggttgag
caggggctcgtaagtggtgagattaaaattctgtatgtcgcgccagagcgcttgattcag
cctcgtactctggatttgttgcaccgcttgccggtgtctctatttgccattgatgaagcc
cactgcgtgtctcagtgggggcatgactttcgctcagactatttacaattgagtctgctg
catcagcagtttcctcaagtgccccgcgttgctctgaccgccaccgctgacgagcgcacc
cgcgcggaaattctcagccggctgcagctggagggcgcggcgcagtttgtcagcggcttt
gatcgccccaatatccagtatcggattgaacaaaagcagaacgcacgccagcaattgctg
cggtttttacacaacgagcaccctcaggatgcgggcattgtctactgcctgtcgcgccgc
aaagtagaagaaaccgccgcctggttgagtgttcagggctacaccgccctgccttatcac
gccggtttgcccgccgccacccggcagcagaatcaagagcgctttttgcgcgaagacggg
gtgattgtcgtggcgaccatcgcctttggtatgggtatcgataagccggatgttcggttt
gtggcgcacctggatttgcccaaaagtcttgaatcttactatcaggaaaccggccgggcc
gggcgcgacggccagccagccaccgcctggatggcctatggcgtgcaggatgtgattaag
cttaagcaaatgctcagccagtctcagggcactgacgagcacaagcggttggagcaccac
aagctggatgccatgctggggttgtgtgaaatcaccagctgtcgccgccaggcgctgctg
tcttattttggcgagcaggatcatcctgactgcaacaattgcgatacctgcctatcgccg
ccggaaacctttgagggcacagtagcggcacaaaaagcgttaagtgtttgctatcgcacc
ggccaaaagttcggtgtcaaccatttaattgatgtgttgctgggcaaagccaccgataag
gtcacgcagttcggccacgaaaagctcagcacctttgccataggcgacgagctggatgcc
aatcagtggcgctcggtattccgccagctggtggcacgaggcctaatgcaggttgatgta
gcaggttacggcggcctgatgctgacggaaaagtgtcgcccgctgttaaaaggcgagagc
cacatccagctgcgtaaagacacaaaagtcgaaaacgggagaaagtctcgcagcggccag
gccgccagcggcttaaccggcccggaccgcgccctgtgggatcgcctgcgcgagctgcgc
aaacgcctggccgccgagcaggatatcgccccctacatgatttttcacgacgcgcattta
atggaaatggtcagcctgcagccgcaagatttggaggcatttgcacgaatttctggcgtg
ggcgccagtaagcgcgagcactatggcgatgcctttgtggaggcgataaccgagcatgta
cagagcctggccgattacgccggtagtgctgccaacgtaaaggccaccgaacacgaaacc
tttgcgctttttaaggcgggcatgacggtggcggatattgcccgccagcgcgacattacc
gagacgacagtctatggccacttggcaggtttgattgagcagggccaactggacgtcgcc
gaagtggtggagctacccgagcaagagctggatgccattttcgatgtaatgctcgcccac
gacgatgaaccctttaagctcaagccggtctatgaggcgctcgatggtgcgtatgattac
ggtgtgctgcgttgcattcgggcggttattgtgcgggagacggcgaattga
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