Gimesia benthica: F1728_02430
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Entry
F1728_02430 CDS
T06296
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gim
Gimesia benthica
Pathway
gim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1728_02430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gim03019
]
F1728_02430
03009 Ribosome biogenesis [BR:
gim03009
]
F1728_02430
Enzymes [BR:
gim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1728_02430
Messenger RNA biogenesis [BR:
gim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1728_02430
Ribosome biogenesis [BR:
gim03009
]
Prokaryotic type
rRNA helicases
F1728_02430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QGQ21615
UniProt:
A0A6I6A8C9
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All DBs
Position
598809..600062
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AA seq
417 aa
AA seq
DB search
MNQKKKKKKKTTTASFDQLGLNDKILKNLSKAGYEKPSPIQAELIPIAVTGKDCIGQART
GTGKTAAFSLPVLQQIDLRRPGIQALILAPTRELSEQVAVEIRKLCPSKSLSLAVLVGGK
PVRPQENQLKKGAQIAVGTPGRVIDHINRGNLKLNTLRFAVLDEADRMLDIGFRPDIEKI
LRKCPKERQTLLLSATLPPPVERLAQRYMNEPVMIDLSENKVSVDAIDQYYITVDPDRKI
KLLSRLLFQERPKQTIVFTRTKRGADKLDRIFSKKLKDVAAIHGDLPQPKRDRVLKKFRE
GKIRLLIATDVMGRGIDVSGISHIINFDIPEFSDDYVHRIGRVGRLSSDLKGAAFTFVAP
DEGDQLTNIENRINHMIQEFRVDKFEAYRPKKPRKELEQISHLGNTEHLINPEFGDF
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagaagaagaaaaagaaaaaaaagaccacaaccgccagttttgatcagttagga
ctcaatgacaaaatattaaaaaacctgagcaaagcaggttatgaaaaaccaagccccatt
caggctgagttgattccgatcgctgtcaccggcaaagactgtatcggccaggcacgtacg
ggaaccggtaaaactgcggcgttctcgttgcctgttctgcagcagattgacctcagacgc
ccaggaatccaagccctgatccttgctccgacccgcgagttgagcgaacaggtcgctgtg
gaaatccgtaaactctgtccttcgaagtcactcagtctggccgtccttgtgggaggcaag
cctgttcgcccccaggaaaaccagttaaagaaaggtgcccagatcgccgttggtacccct
ggacgagtcatcgaccatatcaaccgtggtaatctgaagctaaacacccttcgctttgca
gttctggatgaagcagaccggatgctggacatcggcttccgaccagacattgagaagatt
ctccgcaagtgtcccaaagaacgtcagactttgttgctctcagcaacactgccaccgcct
gtcgagcggttggcacaacgctatatgaatgagcccgtgatgatcgatctgtccgaaaac
aaagtcagcgtcgatgccatcgatcagtattacatcactgtcgatccagatcgaaaaatc
aaactactctcacgactcttgttccaggaacgcccgaaacagaccatcgtcttcaccaga
acaaaacggggagccgacaagctggatcggatcttctcgaaaaaactgaaggacgttgcc
gccattcacggggacctgcctcaacccaaacgggaccgggtactgaaaaaattccgtgaa
ggaaaaatccgtctgctgatcgccactgatgtgatgggacgagggattgatgtcagtggg
atttcacacatcatcaattttgatattcctgaattcagtgatgactatgtgcaccgtatt
ggacgagttggaagactctcatcagatctgaagggggccgcattcaccttcgtcgccccc
gatgaaggtgatcagttaaccaatattgagaaccggattaaccacatgattcaggaattc
cgggtggataaatttgaagcctaccgccccaaaaaaccacgcaaggaactggaacagatt
tctcacctggggaacacagagcacctgatcaatcctgagttcggtgatttttaa
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