Gimesia benthica: F1728_04110
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Entry
F1728_04110 CDS
T06296
Name
(GenBank) AAA family ATPase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
gim
Gimesia benthica
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gim03400
]
F1728_04110
Enzymes [BR:
gim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1728_04110
DNA repair and recombination proteins [BR:
gim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
F1728_04110
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
QGQ21924
UniProt:
A0A6I6A691
LinkDB
All DBs
Position
complement(1023776..1027297)
Genome browser
AA seq
1173 aa
AA seq
DB search
MSQQPTYTEQQAAAIYPRDVSIALSAGAGCGKTFVLTQRFLKLIEPGSPPDRLSHIVAIT
FTERAAREMRDRVRETCLEQLRSCPPEEVGHWQTVIRGLDSARISTIHSFCTSILRTHAV
SARLDPHFGLLEQGTSDAFLRKVVREAIHDLLQEEDEDCLELVYRYGLERTYELFISLVP
QQFRIEFEQFSDLSEEQLAGRMRKFWVDSYIPMQLAEIANAESTRFLLRLMSAQDPVNKK
MRDRFQVLTSRLPELLEGAEHNRAVLLGTLIEHAKVQGAGTKKDWDDLEVYEQIKDGFTE
LRKSLTKVYEILSPDPTAFLQAAEYSLRVLRVTEFVAGRYQESKAEKGLLDFDDLLLQTR
DLFRRDPQAKQRAAAGIEFLMVDEFQDTDPVQSEIVRALCGKELLTGKLFLVGDAKQSIY
RFRRADPEVFHQLRQEIPEQGRLPLSVNFRSQPAILNFTNCLFASAMEQYYEPLTPFDGE
QHSPTPAIEFLFAAPDDPEIKGAEALRETEADWIAARVRQLLEDETPRIWAKNHQTGQRE
LRRVEPGDICILFRALSNVALYEKAFQQQDLDYYLVGGRAFYAQQEIYDLSNLCQYLDNA
DDELSLLGVLRSPFFSLSDDTLYSIVRNADNLTRAMQVEPPEELRPEQQRQVRYAQSVLQ
ELRAKKDRLSLVELLNLALERTGYDAALMNEFLGDRKLANLRKLIELARNFEGTGLFTLK
DFVQRIRDSILEESKEELAATLPETSDVVRLMTIHQSKGLEFPVVILADMDRKPAPGGTA
PFLHPEWGGLLSLPAERGTTPDNFAFKMHRGLEQRADEEETVRLLYVAVTRAADYLILSA
GLPYDRKIESPWMKLLARHFDLTTGAPAIDPYLGKLTLGDVAPDQIPAIRVHHEMPQPLT
RPEKKQRELKPSQFVAALEQGAPEPFPESYGLIAPRPGALSHVSVSQLEVIDAELQHLLE
PEVDQVPLNEVLSAEEATQLGTITHAVIERLEPEKPEQAPRIVAAVLAEQPPQIREKLQP
LVERQISAWYASELCQTLKQTRVHYRELDFLLHWPPGAEADNDQAVTVTGSIDALVQTES
GDWMLFDYKTGSRMARMSAEQLIAEYEFQLGVYTLAVEQLLGARPASIGLAVVQDSVRYI
ECDLDAGRLEQISRRLTQAVSSLLQPSAAAESR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaacaacccacatacaccgagcagcaggcagcagcgatctatccgcgtgatgtc
tcgattgcgctctctgcgggagccggttgcggtaagacgtttgttctgacacagcggttt
ctcaagttaatcgagcccggcagtcctcccgatcgattgagccatatcgtcgcgattacc
ttcaccgaacgggcggcccgtgagatgcgggatcgggttcgtgaaacctgtctggagcaa
ctccgcagttgtcccccggaagaagtcggacactggcagaccgtcattcgggggctggac
tctgcacggatcagcacgattcactctttctgtacatcgatcctgcggacacacgctgtc
agtgcccgtctcgatccccacttcgggcttctggaacagggaaccagtgacgccttttta
cgcaaggtggtccgcgaagcgattcacgatctgttacaggaggaagacgaagattgcctg
gaactggtttaccgctatggactggaacgaacttatgaactgttcatctccctggtgcct
cagcagtttcggattgaattcgaacagttttcagatctgtcagaggaacagctggcaggc
cgcatgcgaaaattctgggtcgattcttatattcccatgcaactggcggaaatcgcgaat
gcggaaagcacccggtttttgctcagactgatgtcggcccaggatcctgtgaataagaaa
atgcgggaccggtttcaggtcctgacatcgcgacttcccgaattactggaaggagcagaa
cacaaccgtgcggttctgctggggactttgattgaacacgccaaagtacagggagcaggg
acgaagaaagactgggatgacctggaggtctatgagcagattaaagacgggtttaccgag
ctcagaaaatcgctcacgaaggtttatgaaattctttcacccgatccaactgccttttta
caggcggctgaatatagtctgcgagtcttaagagtcacagagttcgttgccggtcgatac
caggagagtaaagcggaaaaggggctactggactttgacgacctgctgttgcagacccgc
gacctgtttcggcgcgatccacaggcaaagcagagggcggcagcgggaatcgagttcctg
atggtggatgaatttcaggataccgaccccgttcagagcgaaatcgtgcgtgccttgtgt
ggaaaagaacttctcacaggcaagctcttcctggtgggggatgcgaagcagtcgatttac
cgtttcagacgcgcggatcccgaagtctttcatcagctgcgtcaggagattccggagcaa
ggccgtttgccgctgagcgtcaatttccgcagtcaaccagccattttgaatttcacgaac
tgcctgtttgcctctgcaatggagcagtattatgagccgttgactccctttgacggggaa
cagcattctccaacgccggcgatcgaatttctgttcgctgctcccgacgatccggagatc
aagggggccgaggcactccgcgagacggaagcggactggatcgcagcccgggtacgccag
ctgctggaagacgagactccccggatctgggccaaaaaccatcagaccggccaacgcgaa
ctgagacgcgtggagccgggggatatctgtattctgtttcgggctctgtcgaatgtggcc
ctgtatgagaaagcatttcagcagcaggatctggactattacctggttggcggacgcgcg
ttttatgcgcagcaggaaatctacgatctgagtaatctgtgccagtatctggataacgcc
gatgatgaactgagtctcctgggcgttttacgctctcctttcttcagtctgtctgatgat
acgctgtattcaattgtcagaaacgcagacaatctgactcgtgcgatgcaggttgagccg
cccgaagagctccggcctgagcagcagcgacaggtacgttatgcccaaagcgtcctacag
gaactgagagcaaaaaaagatcgtctctcactggtggaactgttgaatctggctctggag
cgaaccggctacgatgccgctttgatgaacgagtttctgggagaccgcaagctcgctaac
ctgaggaagctgatcgagctggctcgtaattttgaagggaccggcctgtttacgctgaaa
gatttcgtgcagcgaattcgtgattccattctggaagagagtaaagaagaactggcggcg
acattacctgaaaccagtgatgtggtccgcctgatgacgattcaccagtcaaaagggcta
gaattccccgtggtgattctggctgacatggatcgtaagcctgcaccgggaggaaccgct
cccttcctgcacccggaatggggaggcttgctcagcctgcccgccgaacggggaacgact
cccgacaattttgcttttaaaatgcaccggggactggaacagcgggccgacgaagaagag
accgtgcgtctgctctatgtcgccgtaacccgggcggcagattacctgattctgtctgca
ggcttaccgtatgatcgcaaaattgaatcaccctggatgaagctgctggcccggcatttt
gatctcaccacaggcgcccccgcgatcgatccctatctgggtaaactgacgctgggtgat
gttgcccccgaccagattcctgcgattcgtgttcatcacgagatgcctcagccgctcacg
cgaccagagaagaaacagcgagaattgaaacccagtcagttcgtcgccgcgctggaacag
ggggctcccgaaccatttccggaatcttatggcctgattgctccacgaccgggggcgctg
tcgcatgtgagtgtttcgcaactggaagtaattgacgccgaactgcaacacctgctggaa
ccggaagtggaccaggtaccgttaaacgaggtgctgtcggcggaggaggcgacacaactg
ggaacaatcacacacgcggtcatcgagcggctggaaccggagaagcccgaacaggcaccg
cggatcgtcgctgccgtcctcgcagaacagccacctcagatacgtgagaaactgcaacca
ctggtagaacgccagatatccgcctggtatgcctcggagttgtgtcagactctgaaacag
acgcgggtccattatcgggaactcgattttctgttgcactggccccccggagccgaggcg
gacaacgatcaggcggtgacagtcacaggcagcattgacgcgctcgttcaaaccgagtcg
ggggactggatgctgtttgactataaaaccggttcccgaatggcacgaatgagcgcagaa
cagctgatcgcagagtatgaattccaattaggagtctatacactggccgtagaacagcta
ctgggggccagacccgcttctattggtctggcagtcgttcaggactccgtgcggtatatc
gaatgtgatctggacgcgggccggctggagcagatctcccgccggttgacacaagctgtt
tccagtttgcttcaaccttcagcagcggcagaaagtcgttaa
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