Gimesia benthica: F1728_04480
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Entry
F1728_04480 CDS
T06296
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gim
Gimesia benthica
Pathway
gim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1728_04480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gim03019
]
F1728_04480
Messenger RNA biogenesis [BR:
gim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F1728_04480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B_3
Lactamase_B
RMMBL
Lactamase_B_6
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QGQ21993
UniProt:
A0A6I6A799
LinkDB
All DBs
Position
complement(1123755..1125077)
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AA seq
440 aa
AA seq
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MRIIYLRITVHRGTQEVGGSCIEVSTDNSRIILDIGLPLFNRNRQALDSFAIKRMTREQL
RNEGLLPEIPGLYEGAGGPDAILLSHAHMDHTGLLEHCQSQIPVYASSGTSKMMLAGSLF
AAQVGLSREQFREVLPESPVTIGDFKITGFPVDHSIYGCLAYLIEAEGQSILYSGDLRSH
GRKPGMNRRLIEVLQDKTIDVMLMEGTHFGFPDGNSKNEYELEKEITELVRESESLVLAS
FSPQHVDRLVAFIRAAIKTKRTFVADVYTAFIMYLLKNEIPTIPQPKSAGLVRVYVPESL
RQPNTRRGRVQQVERFEHAEIKLDEIMQSPEKYVMVFRSSMLDDFKEGLPQDVCCLYSRW
HGYLEQSGWESTRHSIMQVDGTIHEVHTSGHMLSADIVQLVRNINPQAIVPVHTFEPGRF
LEHFENVQLLQDGEPFLVEA
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
attaggataatttatttgaggattacagtacatcggggaactcaggaagtgggggggagc
tgtattgaggtcagtacggacaactcacgaattattctggatataggtttacccctattt
aatcgcaatcgacaggctctggacagctttgcaatcaaaaggatgacaagagagcagctt
cgaaatgaggggttattgccagagattccgggcttatatgaaggggcagggggccctgat
gccattctgctgtcccatgcacacatggatcacacgggactgcttgagcactgtcagtct
cagattccggtctatgccagctctggtacgagcaaaatgatgctggcaggaagcctgttt
gcagctcaggtgggactgtcgcgtgaacaattccgtgaggtcctgccagaatcccccgtc
accatcggggatttcaaaatcacagggttccccgtagatcattccatctatggatgtctg
gcatatttaatagaggctgaggggcagtcgattttgtattccggtgatctcaggtcccat
ggcagaaaaccgggaatgaaccgccggttgatcgaagtgctccaggacaaaaccattgat
gtgatgttgatggaaggcacgcacttcggttttccggatggaaattcgaagaacgaatac
gagctcgaaaaggagatcacagagctcgttcgggaaagcgaaagcctggttctcgcatcc
ttttcgccgcagcatgtagaccgactggtggccttcatccgtgcggccataaaaacaaag
cgaaccttcgtggctgatgtctatactgctttcattatgtatctgctgaaaaatgagatc
ccaacaataccgcagcccaagtcagcaggattggttcgggtctacgtccctgagagcctc
aggcagccgaatacacgcagggggagagttcagcaggtggagcgattcgagcatgcagaa
atcaaactggacgaaataatgcaaagtcctgagaaatatgtgatggtctttcgctcttcg
atgctggatgattttaaggagggacttccccaggatgtctgttgtctgtattcacgctgg
catggttatctggagcagtcaggctgggaatctactcgccattccataatgcaggtcgat
ggaacaatccatgaggttcataccagcggacatatgctttcagcagacattgtccaactt
gtgcggaacatcaatccccaggccattgttccagttcatacgtttgagcctggccgattt
ctagaacactttgagaatgtgcaacttcttcaggatggtgaaccattcttggttgaggca
tga
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