Gimesia benthica: F1728_07875
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Entry
F1728_07875 CDS
T06296
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gim
Gimesia benthica
Pathway
gim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1728_07875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gim03019
]
F1728_07875
Enzymes [BR:
gim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1728_07875
Messenger RNA biogenesis [BR:
gim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1728_07875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGQ22601
UniProt:
A0A6I6AC07
LinkDB
All DBs
Position
2100430..2101776
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AA seq
448 aa
AA seq
DB search
MKTFKEIELIAPVQRALVEENYETPTPIQAQTIPSALEGHDILGCAQTGTGKTAALALPI
LNHLGKENRKAKPYRPQALVLAPTRELAIQIGDSFAAYGRHLKLRHLLIYGGVSQKNQVK
GLSRGAHIVVATPGRLLDLMNQGEIHLDQLELFVLDEADRMLDMGFLPDLKKIISQLPEK
RQSLFFSATLAPKIKELAQRLLKNPVSVNVTPQKTSVKKIQQQLIYVERNGKQSLLQNIL
ADSAVDRALVFMRTKRTANMLSKRLTQIGIRSSAIHGNKSQSARQQALEAFRSRKIQVLV
ATDVAARGIDIEGITHVINFDLPVEPEAYVHRIGRTGRAGAEGIAISFCSDNERGELRAI
EKLIGHKVPVSKEHRAPRAQKNKADALPDPTPRQRSNGKNGHTVEGTETTSRNRFRRKKT
AKTAASKLQQEPKRTKWRRLKPRASQSS
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcaaagagattgaattgatcgccccagtccaaagagcactggtcgaagaa
aattatgaaaccccgacgcctatccaggcgcaaaccattccctccgcactcgaaggacac
gatattctgggatgtgcgcagacaggaacgggaaaaacagccgctctggccttacccata
ctcaatcatctgggaaaagagaatcgcaaagccaagccctatcgtccacaggctctggta
ctggcccccacccgggagctggccattcagatcggtgacagttttgccgcatacggcaga
cacctcaaactgcgccacctgctgatttatggtggtgtcagccagaaaaaccaggtcaaa
ggcctgagtcgtggcgctcacatcgtagtcgctacgccaggacgtctgctggacttaatg
aaccagggagaaatccatctggaccagctggaacttttcgtcctggacgaagccgaccgc
atgctcgacatgggctttctgccggacctgaagaagattatcagtcaactgcctgaaaaa
cgtcagtcactgttcttctcagccaccctggctcccaaaattaaggagttggctcaacgc
ctgctgaaaaatccagtcagtgtgaatgtcactcctcaaaagaccagtgtcaaaaaaatc
cagcaacaactgatctacgtggaacggaatggaaagcagtctctgctgcaaaatatcctg
gccgactccgctgtggatcgagccctggtcttcatgcgaaccaagcgtactgccaacatg
ctgtcaaaacgtctcacgcaaatcggcatccgctcatctgccatccatggcaataaatca
cagtcggcccgccagcaggcactcgaggctttccgcagccgcaaaatccaggtgctcgtt
gctaccgatgtcgcggcccgtggcatcgatatcgaaggcatcactcacgtgatcaacttc
gatctaccggttgaaccggaagcctacgtgcatcgcatcggccgcaccggacgcgcaggg
gcagagggaatcgccatctccttctgcagtgataacgaacgaggcgaactgcgggccatc
gaaaaactgatcggccacaaagttcccgtctccaaagaacaccgggctcctcgtgctcag
aagaataaagctgatgccctgccagaccctacgccccgacagcggagcaatggtaaaaac
ggacacactgtggaaggaacagaaacgacttcgcgaaaccgctttcgacgcaagaaaaca
gcgaagacagccgcgagtaaactacaacaggaacctaaacgcacaaaatggcgtcgcctg
aagccgcgtgccagtcaatcaagttag
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