Gimesia benthica: F1728_08030
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Entry
F1728_08030 CDS
T06296
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gim
Gimesia benthica
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gim03016
]
F1728_08030
Enzymes [BR:
gim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
F1728_08030
Transfer RNA biogenesis [BR:
gim03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
F1728_08030
Prokaryotic type
tRNA splicing ligases
F1728_08030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGQ22626
UniProt:
A0A6I6A9A9
LinkDB
All DBs
Position
complement(2142189..2143580)
Genome browser
AA seq
463 aa
AA seq
DB search
MNSRQLLKLGVPQYCLKTAMTAIQQAVANENIRGKEVKARMQQVIAAPEDFLEDEAFGAL
AAELVEDNSEEVVEPIDYQIWGKEGIDEGAFSQMELACHVPSAYGAALMPDAHIGYGLPI
GGVLALENAVIPYAVGVDIACRMKLSVLDTAVDALDDKRHQFIDALNRGTVFGVGTAHEK
KQHHAVMDQDWTVTKVTRQNKDKAWKQLGSSGSGNHFVEFGVLTITEDDAELGLTAGEYV
ALLSHSGSRGTGASVCSTYSAIAQSQLRKRHQHLGRLAWLDMDSEAGQEYWAAMNLMGDY
AAANHAVIHKNVAALLGSKVISGVENHHNFAWKEEHGGREVYVHRKGATPAAAGEMGVIP
GSMADPAFVVRGKGNPASLNSASHGAGRCMSRNKAKDKYRWKAVKNDLEKRGITVISAGA
DEVPGVYKNINEVMAEQQDLVEIVARFNPKVVKMCGDGSRAED
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaactctcgacagttactgaaactgggtgttccacagtattgtctgaagacggccatg
acggcgattcagcaggccgtcgcgaatgaaaatattcgcggtaaggaagtcaaagcgcgc
atgcagcaggtcatcgctgcgcctgaggactttctggaagatgaggcattcggagccctg
gctgcagagctggttgaagataactcggaagaagttgttgagccaatcgattaccagatc
tggggtaaggagggcatcgatgaaggtgcgttctcccagatggaactggcgtgccatgtt
ccatcggcttacggcgctgcgctgatgccggatgcacacatcggttatggtctgcctatc
ggcggcgtactggcactggaaaacgcagtgattccttacgcggtcggtgtggatatcgcc
tgccgaatgaagctgtcggttctggatacggccgttgatgcactggatgacaaacgtcat
cagttcattgatgcgctgaatcgaggaaccgtattcggcgtgggtacggctcacgagaag
aagcagcatcatgcagtgatggatcaggactggacggtgacgaaagtgacacgtcagaac
aaagacaaggcatggaaacagctgggatcttcgggttcgggcaaccactttgttgagttc
ggtgtcctgacgattacggaagatgatgcagagctgggcctgactgcaggtgaatacgtg
gcattgttgagccatagtggtagccggggaaccggtgcgtcggtatgcagcacgtattca
gcgattgcgcagtcgcaactgcgaaagcgtcatcagcacctgggacgactggcatggctg
gacatggattcggaagccggccaggaatactgggcagcgatgaatctgatgggcgactat
gctgcagccaaccatgctgtgatccataagaacgtggcggctttgctgggaagcaaagtg
atctccggcgtggagaaccaccacaacttcgcctggaaggaagagcacggcggccgggag
gtctacgtgcaccgtaagggggcaactccagcggcggcaggcgagatgggtgtgattccc
ggttcgatggccgatccggcgtttgtggttcgtggaaaaggaaatccagcgagcctgaac
tcggcatcgcatggtgcaggacgctgcatgtctcgtaacaaagcgaaggataagtaccgc
tggaaggcggtgaaaaacgatctggagaagcgaggcatcaccgtgatctcagcgggggct
gacgaagttcccggtgtttacaaaaacattaatgaggttatggccgagcagcaggatctg
gtggaaatcgtagcacgcttcaacccaaaagtggtgaagatgtgtggcgacggaagccgg
gccgaagattga
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