Gimesia benthica: F1728_08405
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Entry
F1728_08405 CDS
T06296
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gim
Gimesia benthica
Pathway
gim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1728_08405 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gim03019
]
F1728_08405 (rnr)
03016 Transfer RNA biogenesis [BR:
gim03016
]
F1728_08405 (rnr)
Enzymes [BR:
gim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F1728_08405 (rnr)
Messenger RNA biogenesis [BR:
gim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F1728_08405 (rnr)
Transfer RNA biogenesis [BR:
gim03016
]
Prokaryotic type
tRNA degradation factors
F1728_08405 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QGQ22695
UniProt:
A0A6I6ABE5
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All DBs
Position
complement(2237289..2239586)
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AA seq
765 aa
AA seq
DB search
MPDFEKKILEYVARPGYTPIREKALLKKVGGSKSTSSEFEQAMQSLQSRKEILVSDSGLI
RPVKKEGWIAGIIKKINSGAGYLIPHHKPDDIAHDQRHAGDLYISERDMGDAQTGDEVYA
TVINRRRSGGQICGRVVEIIERASTTFVGTYFETQGEGYVHVDGKIFNSPIHVGDPGAKG
VEPEDKVVIDILHFPSKSYLGQGVISKVLGPHGKPGVDLLSIVYEFGIPMDFPEEVLEAA
REQASLFDETKLGNRRDLTNETVVTIDPADARDFDDAISLTQNERGHWVLGVHIADVAHF
VKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVP
VHTEFVNSAIRVKKRFAYEQVLPIIQECDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAA
GALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRR
VHPSPDYQRQVEFAEFVSALGYTLKKAQSRKDLQRLIEQVHGTAVEQAINYSMLRSLKQA
EYTDEELGHYALAVEHYCHFTSPIRRYPDLTIHRMIDEILERPDKGKGQSPQGLRQLGHD
LSLRERRAESAERELTKVKLLTWMVENKITTLKTMITGVESFGLFCRGVDVPVEGLLHIS
RLGKNDYFHQDPAKFSIVGERTGQEFRIGDFLEVEVEKIDLDRRELDFRMPRAERSGNSK
SKSDNGNSKQSGKKPTRASSKGKGAVKKKKNRPGKSPRSKKKKRK
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgcccgattttgagaagaagattctcgagtacgtagcccgccccggttacacaccgatt
cgggaaaaagcgctgctgaaaaaagtgggaggctccaagtcaacttcttctgaattcgag
caggccatgcagagcctccagtcccgcaaagagattctcgtctccgattcggggctgatt
cgccccgtgaaaaaagagggttggattgccgggattatcaagaaaatcaattccggggcc
gggtatctgattcctcatcataagccggacgacatcgcccacgaccagcgtcacgcaggc
gatctgtatatttccgagcgggatatgggggatgctcagactggcgatgaggtttatgct
accgtgatcaatcgccgccgcagcggagggcagatctgtggtcgcgttgtggaaatcatc
gagcgggcttcgacgacatttgtcggcacttacttcgaaacacagggcgaaggctatgtg
cacgtggacggcaagatattcaactcgccgattcatgtgggcgatccgggtgcgaaaggt
gttgaacctgaggataaggtcgtcatcgacattctgcattttccttcgaagagctatctg
gggcagggggtgatttccaaagtcctggggccacacgggaagccgggcgttgatctgctg
tccatcgtctacgaattcggcatcccgatggactttccggaagaggttctggaagcagct
cgagagcaggcgagcctgtttgatgagacaaaactggggaatcgccgcgacctgactaac
gagacggtcgtgacgattgaccctgcggatgcccgggacttcgatgatgcaatttcgctg
actcagaacgagcgcgggcactgggtgctgggcgtgcatattgctgatgtggcgcacttt
gtcaaagagggttctgtactggaccgtgaggcccgacggcgggggaccagtgtgtatctg
cccggccaggtgattccgatgctgcctgagatcatttcaaatggtctggccagtctacaa
caggatcaggtgcgtttcaccaaatctgcgtttatcgaatttacgtcggatggtgtgcct
gtacatacggagttcgtcaattccgcgattcgggtcaagaagcggtttgcttacgagcag
gtactgcccatcattcaggagtgtgacgaagaaggggaccggataccccgggacgtccgc
gaactgctgaaaaacatgcatcatctggcaatgatgctgcggaaacgtcgctttgctgcc
ggcgcactggagttgcacctctccgaagtgcggctcacctttgacgacaaacatcgtgtg
agtggtgctgttgaacgcgagcacgacgaaagccaccagatcatcgaagaattcatgctg
gcggcgaatatcgctgtggcagaaggactcaatgaccggggactgcggtttctgcgccgc
gtgcatccgtcgcctgactaccagcggcaggtggaattcgccgagtttgtgagcgcactg
ggttatacactcaaaaaggcccagagtcgtaaggacctgcagcgtctgatcgagcaggtg
catggaaccgcagtcgaacaggccatcaattattccatgttacgtagtctcaagcaggca
gaatatacggatgaagagcttgggcactacgctctggccgttgagcattactgccacttc
accagcccgattcggcggtaccctgacctgacaattcatcgcatgatcgatgaaattctg
gagcgtcccgacaaagggaaagggcagagcccccaggggctgcgtcaactgggccacgac
ctctcgttgcgtgagcgtcgtgccgagtcggcagaacgggagctgactaaagtcaaacta
ctgacctggatggtcgaaaataaaatcaccacactgaaaactatgatcacgggagtagag
tcgttcgggctgttctgccggggtgtggatgtgcctgtggaaggactgttacacatcagc
cgactgggcaaaaacgattactttcaccaggatccagccaaattcagtattgttggggag
cggacaggtcaggagttccgtatcggcgatttcctggaggtggaagtcgaaaagatcgat
ctggatcgtcgggagctggattttcgaatgccccgagcggagaggtcaggcaattcgaag
tcaaaatcagacaacggtaattcgaagcagtctggtaaaaagccgactcgggcctcttcc
aaggggaagggggctgtgaaaaagaagaagaaccggccggggaagtcaccgcggagcaaa
aagaagaaacgcaagtaa
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