Gimesia benthica: F1728_08410
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Entry
F1728_08410 CDS
T06296
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
gim
Gimesia benthica
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gim03019
]
F1728_08410
Messenger RNA biogenesis [BR:
gim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F1728_08410
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Matrilin_ccoil
Cas3_HD
HD-CE
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QGQ22696
UniProt:
A0A6I6A9I0
LinkDB
All DBs
Position
complement(2239591..2240562)
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AA seq
323 aa
AA seq
DB search
MSRQNINQLKDGDTVNEVYLLVDKQLRANRNASLFLSADLRDASGVVNARMWNVVEDRML
HFQSGNYVQVKGKVHLFQGALQIILTYIEPVSAENLDPAEFQPQASHDVQALLARLREML
LGIENNEVRTLMECFLVDEALMEEFCRAPAGVKTHHAYHGGLIEHVVNLMETAHRIADLY
PKADMSLLLAGVFLHDIGKVRELGYENEFIYTDEGQLLGHLIIGVEMLTEKIRAYQEMTG
ESFPKEAELRLKHMIVSHHGTYEFGSPRLPMTPEAVALHHLDNLDAKVNEFARFIDDDLN
STSSWTPYSPRLQRKLFKGMTED
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacaaaatataaatcaactgaaagacggggatactgtaaacgaggtttatctg
ttagttgacaagcagttacgagcgaatcggaatgcaagtctgtttctgtctgctgatctg
agagatgcgtcgggtgtcgtcaatgcgcggatgtggaatgttgtcgaagatcggatgctg
cactttcagtctggcaactacgttcaggtgaaaggcaaagtgcatctcttccagggcgca
ctgcagatcatcctgacctacatcgaaccggtctccgcggagaacctggacccggctgag
tttcagccccaggcatcacatgatgtgcaggcactgctggcgcggttacgtgagatgctg
ctgggaattgaaaataatgaggtccgcactctgatggagtgcttcctggttgatgaagcg
ctgatggaagagttctgtcgggctccggccggtgtgaagacgcatcatgcctaccatggc
gggctgatcgagcatgtggtcaacctgatggagaccgcgcatcggattgcggatctgtat
cccaaagcggatatgagtctactgctggcaggtgtgttcctgcacgatatcggcaaggtc
cgcgaactgggctacgagaacgaatttatctataccgatgaaggacagttgctggggcac
ctgattattggcgtagaaatgctgaccgagaagattcgcgcttaccaggaaatgacggga
gaatctttccccaaggaagcggaattacggctgaaacacatgattgtaagccatcatggc
acgtatgaatttggcagcccccgtctgccgatgactccagaagcagtcgccctgcatcat
ctggataacctggatgcgaaagtcaatgagttcgcgcggttcattgacgatgatctcaat
tcgacatccagctggactccctattcacctcgcctgcagcgaaaactgtttaagggaatg
actgaggactga
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