Gimesia benthica: F1728_16535
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Entry
F1728_16535 CDS
T06296
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gim
Gimesia benthica
Pathway
gim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F1728_16535 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gim03021
]
F1728_16535 (rpoC)
03400 DNA repair and recombination proteins [BR:
gim03400
]
F1728_16535 (rpoC)
Enzymes [BR:
gim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F1728_16535 (rpoC)
Transcription machinery [BR:
gim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F1728_16535 (rpoC)
DNA repair and recombination proteins [BR:
gim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F1728_16535 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QGQ24193
UniProt:
A0A6I6ACS2
LinkDB
All DBs
Position
4306202..4310569
Genome browser
AA seq
1455 aa
AA seq
DB search
MSVAQTAYERINDYGSVKIGLASPHDIRSWSFGEVKKPETINYRTYRPERDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPIVHIWFFKSMPSR
LGALLNMKTTALEKVIYFQDYVVTDPGDTPLEMCQTMTEEEARQNQAKYGPGSFEIEMGA
EAIKKLLMSLNLVELSEQLRKDLFETNSQQKRKDYIKRLKIVESLRDSDNRPEWMVLEVI
PVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIVRNEKRMLQQS
VDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELK
LHQCGLPKKIALELFQPFIIRRLKDSGHADTIKSAKRMLERKDEDVWDILDEVIQNHPVL
LNRAPTLHRMGIQAFEPILVEGNAIRVHPLVCGGFNADFDGDQMAVHLPLSIEAQVEATT
LMLSTNNIFSPSDGAPIIRPSQDIVMGCYYLTLKKTERVGEGMVFSNVGEVHAAFQQKKL
DRHAIIKVRMPSDKRIKGEGADDFKMGGLIETTTGRVIFNDILPKKMAYYNLTMKGRDLS
NVISDCYLELGRRETINLLDKMKETGFRESTLSGLSFATSDLKTAPNKAKVIGDSEKTVL
QKNKLYDRGLITAEERYNQVLDTWTHAREQITESMMHELENDYRENGKYVNPIYLMSNSG
ARGGIEQMRQLGGMRGLMAKPSGEIIETPIKANFREGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADICQNVVVTEHDCGTTQGMTRGVVYRGEKVEMSLTDAIRGRVSRTNIV
DPITDEVIVRENEMITVDIARRIENMGLEKIQVRSPMTCESSLGICRLCYGMDLSTGSLV
EEGLAVGIIAAQSVGEPGTQLTMRTFHIGGTASREVEESEIRTRRAGKVTFARIRTVVNN
EGMSVVLTRNGEVVVNDVKGRELERYTIPNGATLRVAEGDEVAEGQVICQWDPHSISILA
EVGGRVRFEECVEGKTIRTDKDPSGHIRRSIIEHKGELHPQIIIEDGTGKILDFYYLPEK
ASIEVEEGQQITAGTVVAKNPRESSGTQDITGGLPRVTELFEARRPKDPSVLAEIDGEVE
FVPEKKRGKRIVIVRGEDGTEVEHVIPHGKHLLVHAGDLVKAGDALVRGPLVPHDILRVS
GTEAVQQYLLHEIQNVYRAQRVTIDDKHLEIIISRMLSKVLVEDVGDTNLLPGIVLDKLA
FQKINEETSACVKVVDSGDTDFQPGDLVPLATIEEVNAQVELAGQGPASFSKPRPASASS
QLLGITKASVQSESFISAASFQETTKVLTEAALAGRVDYLVGLKENVILGHLVPAGTGFY
QHQTAEVRIRPEALEELKAEKERILAARMSLLNEVQPDKPVPLGGGQDSEEYGQGGSDSS
LDSTPPSPSPNPFDE
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgttgcacaaacagcttacgagcgaattaacgattacggttccgtgaaaatcggc
ctggccagtccacacgatattcgaagttggtccttcggagaagtcaagaagccggaaacg
attaactatcgaacctaccgtcccgaacgggatggtctgttctgcgaacggattttcggg
ccggaaaaagactgggaatgtgcctgcggtaaataccgggggatgaagtacaagggcatg
atctgcgaccgttgtggtgttaaagtgacccacagtcgtgtgcgtagaaagcgtatggga
cacatcgagctggcagcaccgatcgtgcatatctggttcttcaagtccatgcccagccgc
ctgggtgctctgctgaatatgaagaccaccgccctggaaaaagtgatttacttccaggat
tacgtggtaactgatccgggcgacaccccgctggaaatgtgccagacgatgaccgaagag
gaagcccggcagaatcaggccaagtatggcccaggttccttcgaaatcgaaatgggtgcc
gaagcgatcaaaaagctgctgatgagcctgaacctggttgaactctccgaacagctccgc
aaggatctgtttgaaaccaacagccagcagaaacgcaaagactacatcaaacgtctgaag
attgtggaatcgctgcgtgacagtgacaaccgtcctgagtggatggtgctggaagtgatt
cccgtgattcctccggatctgcgtccgctggtgctgctggattccggcaacttcgccacc
agtgacctgaacgacctgtatcgccgcattatcaaccggaacaaccggttgaagaagctg
gtcgatctcaacgcaccggaagtgatcgtgcgtaacgaaaagcgtatgttgcagcagtcg
gtcgacgctctgttcgacaacaaccgctgtaagcgtcccgtgcttggttcttccaaccgt
ccactgaaatctttgaccgacatgatcaaaggtaagcagggacgtttccgtgaaaacctg
ctgggtaaacgtgttgactactctgcccgtagtgtgattgtagtggggccggaactgaaa
ctgcatcagtgtggtctgcccaagaagatcgcactcgaactgttccagccgttcattatc
cgtcgtctgaaagacagcgggcacgccgatacaatcaagtctgccaagcggatgctggaa
cgtaaagacgaggacgtgtgggacatcctggatgaagtcattcagaaccatccggtgctg
ttgaaccgtgctcccacgctgcaccgtatggggattcaggccttcgagccgattctggtg
gaaggaaacgcgatccgcgtccatccgctggtttgtggtggattcaacgctgactttgac
ggcgaccagatggcggttcacctgcctctgtccatcgaagctcaggtagaagccacaacc
ctgatgctgtcaaccaacaacatcttcagtccttccgacggggcaccgatcattcgtcct
tctcaggatatcgtgatgggttgctactacctgacgctcaagaaaacagagcgggtcgga
gaaggaatggtcttctccaatgtgggtgaagtgcacgccgccttccagcagaagaagctg
gatcgccatgccatcatcaaggtccggatgccatccgacaaacggatcaaaggggaaggg
gccgacgacttcaagatgggcggtctgattgaaacgaccactggtcgtgtgatcttcaac
gacattctgcccaagaagatggcttactacaacctgacgatgaaggggcgtgacctttcg
aacgtgatttccgactgttatctggagctgggacgtcgcgaaacgatcaacctgctcgac
aagatgaaggaaaccggtttccgggaatcaacgctcagtggtctgtcattcgcaaccagc
gacctgaaaaccgcgccgaataaggcaaaggtaatcggggattcggaaaagaccgtactg
cagaaaaacaagctgtacgatcgtggtctgattaccgctgaagagcgttacaaccaggtt
ctcgatacctggactcacgctcgtgagcagattaccgaatcgatgatgcacgagctggaa
aacgactatcgtgaaaacgggaagtatgtgaacccgatctatctgatgtcgaactctggt
gctcgtggtggtatcgaacagatgcgtcagctcggtggtatgcgtggtctgatggccaag
ccgagtggtgagatcatcgaaacgccgattaaggcgaacttccgtgaaggtctgaccgta
ctggaatacttcagttcgacccacggtgcccgtaaaggtctggctgacaccgctctgaaa
acagcggactcaggttacctgacacgtaagctggcagacatctgtcagaacgtggttgtc
accgagcacgactgtggtacgacccagggtatgacccgtggtgtggtttaccgtggtgaa
aaggtcgaaatgagtctgaccgatgcgatccgtggtcgcgtcagccggacgaacatcgtc
gatccgattaccgacgaagtgatcgtgcgtgaaaacgagatgatcaccgtggacatcgcc
cgtcggattgaaaacatggggctggaaaagatccaggtacgcagcccgatgacctgcgaa
tcttcgctggggatctgtcgtctgtgttacgggatggacctttccaccggttcgctggtc
gaagaaggtctggccgtggggatcattgctgcccagagtgtgggtgagcctggtactcag
ctgacgatgcgtacgttccacattggtggtaccgcttcccgtgaagtggaagaaagcgaa
attcgcacccgtcgtgctggtaaagttacatttgcccgtatccggaccgtggtcaacaac
gaaggtatgagcgttgtattgacccgaaacggtgaagttgtggtcaacgatgtgaaaggc
cgtgagctcgaacgttacaccattcccaacggtgcaaccctgcgtgttgctgaaggggat
gaggttgctgaaggccaggttatctgtcagtgggacccgcactcgatttcgatcctggcg
gaagtgggcggtcgcgtccgcttcgaagagtgtgtggaaggcaagaccatccgcaccgac
aaagaccccagtggtcacattcgccgttcgatcatcgagcacaaaggggaactgcatccg
cagatcatcatcgaagatggtaccggcaagattctggacttctactacctgcctgaaaaa
gcaagtatcgaagtggaagaaggtcagcagatcaccgctggtacggtggtcgcgaagaac
ccccgtgaatcttccggtacgcaggacatcaccggtggtctgccgcgtgtgaccgaactg
ttcgaagcccgtcgtccgaaggatccttcggttctcgcggaaatcgacggtgaagtcgag
ttcgtgcctgagaagaaacgtggtaagcgaatcgtgattgtccgcggggaagacggcact
gaagttgagcatgtcattcctcacggtaagcacctgctggtacacgccggcgacctggtg
aaggcgggagacgcactggtgcgtggtccgctggttccacacgacattctgcgtgtgagt
ggtaccgaggccgttcagcagtacctgctgcatgaaattcagaacgtgtatcgtgcacag
cgtgtgacgattgacgataagcatctggaaatcattatttcccggatgttgagtaaggtg
ctggtagaagatgtgggtgataccaatctgctgccgggcatcgtgctggataagctggcc
ttccagaagatcaacgaagaaaccagtgcctgcgtgaaggtcgtcgattccggcgatact
gacttccagccaggcgacctggtacctctggcgacgatcgaagaagtgaatgcccaggta
gaactggccggtcagggacctgccagcttctccaaaccgcgtccggcttcggccagctcg
cagttgctggggattaccaaggcttcggttcagagtgaaagtttcatctctgcagccagc
ttccaggaaactaccaaggtgctcaccgaagcggctctggccggtcgggtcgactacctg
gttggtctgaaggaaaacgtgattctggggcacctggttcctgctggtaccgggttctat
cagcaccagactgccgaagttcggattcgtcccgaggctctggaagagctgaaagccgag
aaagagcggattctggcagcacggatgagtctgttgaacgaagttcagcccgacaagccg
gtcccactgggcggtggacaggattcggaagagtatggacaggggggctctgattcttcc
ctggacagcaccccgccgagccccagtccgaacccttttgacgagtag
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