Gimesia benthica: F1728_21410
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Entry
F1728_21410 CDS
T06296
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
gim
Gimesia benthica
Pathway
gim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F1728_21410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gim03021
]
F1728_21410
Transcription machinery [BR:
gim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F1728_21410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
QGQ25088
UniProt:
A0A6I6AFQ1
LinkDB
All DBs
Position
5508524..5510287
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AA seq
587 aa
AA seq
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MHRFDANLNSLFQEAEEQGFLTFQQVHTFLPDEGGDPSLIEYIVVGLEERALDLIDDPNA
DIDEEEVSAMDTSADTDPEASSNSDDDDDSNSSMVEAETSLSSRDPIRMYLSQMGNIPLL
SRSREIFLAKKIEITRKRFRRTVLESDFALKIAIDTLEKVYAGELPFERTLRTSDTEDAT
KDQIMGRMPFNIATLQALMEKNRDDFEKLESGEAGKVEQREIRKRMRIRRQKMATLCEEL
CLRTQRLQPVLKRIHQIAGRMREVQEQLEDFRQLRHKTTDTRLLERELAELTTMVVESAD
DFQSRSREIKRRFDDWTEAKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGV
EKYEYRRGYKFSTYATWWIRQAITRAVADHARTIRIPVHMFQSISTLKARSEQIRQETGR
EPTMEELADSVGLGVEETERIMKTWKHPISLDTPVGESEDSSFGDFLEDGHESSPADAAM
REMLKDKIEHVLKSLTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALR
KLQHQTRSAHLRGFVDAIFPNKEDEENQTEEGVQSEQESSSMVGALE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
gtgcaccgtttcgatgccaatctgaattcattatttcaggaagcggaagaacaaggtttt
ctaacatttcagcaggttcacacgttcctgcctgatgaaggtggcgatccgtctctgatc
gagtacatcgttgtcggtctggaagagcgtgccctggatctgattgatgatccgaatgca
gatatcgatgaggaagaagtatctgcgatggatacatctgcagatacggacccggaagct
tcgtcaaattcagacgatgatgacgattccaattcgtcaatggtggaggctgaaacttca
ctctcttcacgcgatcccattcgcatgtacctcagccagatgggtaacattcccctgttg
agtcgttcgcgtgaaatctttctggcaaagaaaatcgagattacgcgcaagcggttccgc
cgcactgtgctcgaatctgactttgcactgaagattgccatcgatactctggagaaagtt
tacgcaggtgaactgcccttcgaacgcacactgcgaacttctgatactgaggatgccacc
aaagatcagatcatgggccggatgccatttaatatcgccactttgcaggcgttaatggag
aaaaatcgggacgattttgaaaaactcgaatcgggtgaagccggcaaggtcgaacaacgc
gagattcgcaaacgcatgagaattcgtcgtcagaaaatggcgacgctttgtgaagagctc
tgtctgcgaactcagcgtctgcagcccgtcctgaaacgcattcaccagattgccggtcgg
atgcgtgaagtacaggaacagctggaagactttcggcagttgcgtcacaagacaacggac
acacgcctgctggaacgcgaactggcagaactgacaaccatggttgttgaatcggccgat
gactttcagagtcgttcacgtgaaatcaaacgtcgctttgatgactggacggaagccaaa
cagcagctttccggcggtaacctgcggctggttgtttcgatcgccaagaaatatcgtaac
cgtggcctgagcttcctcgacctgatccaggaaggaaatgccggcctgatgcggggcgtt
gagaaatacgaataccgccgtggttacaagttctcaacttacgctacctggtggattcgt
caggcaattacccgtgcggttgccgaccatgcccggacgattcgtattcccgtccacatg
ttccagagcatctcgaccctcaaagcccgcagcgaacagattcgccaggaaaccggtcgc
gaaccgaccatggaagaactggctgattccgtcggactgggtgtggaagagactgagcgg
atcatgaagacctggaagcatccgatcagcctggatacacccgtcggagaaagcgaagac
agcagcttcggcgatttcctggaagacggacacgaatcttcgcccgccgacgccgcgatg
cgggaaatgctcaaagacaaaatcgagcacgtgctcaaaagtctgacctatcgcgaacgg
gaaatcattcgtctgcgatatggtctgggtgacggctacagctacaccctcgaagaaacc
ggtcgtatcttcaaggtgacccgcgaacgtatccgtcagatcgaatccaaggccctgcgg
aaactgcagcaccagacgcgaagtgcgcacctgcgtgggttcgtggatgccatcttcccc
aataaggaagatgaggaaaatcagacagaagagggtgttcagtcagaacaggaatcctcc
agcatggtcggagcactggaataa
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