Gimesia benthica: F1728_23350
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Entry
F1728_23350 CDS
T06296
Name
(GenBank) tetratricopeptide repeat protein
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
gim
Gimesia benthica
Pathway
gim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F1728_23350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gim03021
]
F1728_23350
03400 DNA repair and recombination proteins [BR:
gim03400
]
F1728_23350
Enzymes [BR:
gim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F1728_23350
Transcription machinery [BR:
gim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F1728_23350
DNA repair and recombination proteins [BR:
gim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F1728_23350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_8
TPR_1
TPR_16
TPR_14
TPR_19
TPR_12
TPR_9
ANAPC3
SAM_EPH
ARM_TT21_N
ARM_TT21_C
TPR_CcmH_CycH
T7SS_EccA1_N
TPR-S
Motif
Other DBs
NCBI-ProteinID:
QGQ27071
UniProt:
A0A6I6APJ2
LinkDB
All DBs
Position
6053878..6055125
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AA seq
415 aa
AA seq
DB search
MKRIVCSDQVSELNSEVQSLVKRIADGESSSALCARVGIALHLLGKHRQAVIELEKVTDN
ATAAFFHAVSLIALKRYDDADQQLEAAAKLGYDSIECSLRRAETRRLVSKLDEAESLLSS
IAKDAAGRAEYSFQMGCIRSDRGDLYGAIEYFERAVDMDPRHSRAIFRLAGENASRGNDE
DAIRLYEQSLSSPPFYLGAILNLGLLYEDMENYPAAAFCFRRILEADPTNEMAAMYLKDI
EAADNMYYDEETARNEARMKQLLDRPVTDFELSVRSRNCLHAMDIHTLGDLTRVSENDLL
AGKNFGQTSLDEIREMLSSFGLHIGQNLHEALGQEGGYAALPPELADNPVTEKPISDLGL
SVRSRKCMSRLGIGTIGELLRRSPDELLASRNFGVTSLNEIREKLTEMNLKLRND
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaagaattgtttgctctgatcaggtttcagagctcaacagtgaagtacagtcgctc
gtcaaacgcattgcagacggagaaagttcttcggcactgtgtgcccgggtcggcatcgcc
ctgcatctgctgggtaagcatcggcaggccgttatcgaactggaaaaagtcacggataac
gcaaccgctgctttttttcatgccgtctcgctgatcgctctcaaacgttatgacgatgca
gatcaacagctggaagctgctgccaagctgggttacgactcgatcgaatgctcgctgcgg
cgtgcagaaacccgtcgtctggtcagcaagctggatgaagcagaatcgctgctctcttcc
atcgccaaagatgccgctggtcgtgctgagtactcattccagatgggttgcattcggtcc
gatcgtggcgacctgtatggcgcaattgaatacttcgaacgtgccgtcgacatggatccc
cgtcattcacgggctatcttccgtctggctggagaaaacgcatcacgtggaaacgacgaa
gatgcgattcgcctgtatgagcagtctctttccagcccgccgttctacctaggcgcgatc
ctgaacctgggtctgctttacgaagacatggaaaactacccggctgctgccttctgtttc
cgtcggattctggaagcggatccaaccaacgagatggcagcgatgtacctcaaggacatc
gaagcagccgacaacatgtactacgacgaagagactgcccgcaacgaagcccgcatgaag
cagctgctggatcgtcccgttaccgacttcgaactgtctgtccgcagccgcaactgtctg
cacgcgatggacattcacacgctgggtgatctgacacgcgtcagtgaaaacgatctgctg
gccggtaagaactttgggcagacctcactggacgaaattcgcgagatgctgtcttccttc
ggtctgcacatcggtcagaacctgcacgaggctctggggcaggaaggtggctatgccgct
ctgcctccggaactggcagacaacccggttaccgaaaagccgatctccgatctggggctt
tccgtgcgttcgcgaaaatgtatgtcgcgtctcggtatcggcaccattggtgagctgctg
cgtcgcagcccggacgagctgctggccagccggaacttcggtgtgacctcgctgaacgaa
attcgcgagaagctgaccgagatgaacctcaagctgcgtaacgactag
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