Gimesia benthica: F1728_26270
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Entry
F1728_26270 CDS
T06296
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gim
Gimesia benthica
Pathway
gim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1728_26270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gim03019
]
F1728_26270
03009 Ribosome biogenesis [BR:
gim03009
]
F1728_26270
Enzymes [BR:
gim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1728_26270
Messenger RNA biogenesis [BR:
gim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1728_26270
Ribosome biogenesis [BR:
gim03009
]
Prokaryotic type
rRNA helicases
F1728_26270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QGQ25963
UniProt:
A0A6I6AH40
LinkDB
All DBs
Position
complement(6746763..6748526)
Genome browser
AA seq
587 aa
AA seq
DB search
MSTDVSEQTKFTDFALAQPILAALETLGYQTPTPIQAQTIPHLLEGRDLVGQAQTGTGKT
AAFALPLLSNIDLEVKAPQVLVLAPTRELAIQVSESFKDYGAELQGLQVLPIYGGASFRD
QLQPLKRGVHVVVGTPGRVMDHMRRGTLKMDQLRCLVLDEADEMLRMGFIDDVEWILEQT
PENHQTTLFSATMPDAIRRIAVNYLQSPEEITVKVKTRTADTIHQRFWLAKGHHKMDALT
RILEVEETDGVIIFVRTKSITTELAEKLEARGFLSAPLNGDIPQRQRELTVGRLKAGHVN
IVIATDVAARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGHAITFVSPRETRSL
SNIERAIKHKLERMDLPTIEVINERRTARFKESITSAMSAPDFGMFRKLLSEYQADTSCP
EIEIAAALACLHQGKRPLFLQETTRQETRKPRETEGHKPPQGERRFNKDKDRPERPRKRE
FSDSPEEGMERFKLQVGHNHGVKPGNIVGAIANEANLDSQYIGRINIFDEFSTVDLPEGM
PRNIFRALKNVWVAGQQLRISRWESPETFAGKKKRFKGKQKHKQQKA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactgatgtctctgagcagacaaaattcactgattttgcgcttgcacaacccatt
ctcgctgcacttgagacgctgggctaccagacacccaccccgattcaggcacaaacgatc
ccgcatctgctggaaggtcgtgacctggtaggtcaggcacagacgggaaccggcaaaacc
gccgcgttcgcactccccctgctctcaaatattgatctggaagtcaaagctccccaggta
ctagtactggctccgacccgggaactggcaatccaggtttctgaatcgttcaaagattac
ggtgcggaactgcagggactgcaggtactccccatctatggaggcgccagcttccgcgac
cagttgcaacccctgaaacggggcgtgcatgtcgtagtgggaactcccggacgcgtcatg
gaccacatgcgtcgtggcactctgaaaatggaccagctccgctgcctcgtactcgatgaa
gcagacgaaatgctgcgtatgggcttcattgacgacgtggaatggattctggaacagact
cctgagaaccatcagaccacactcttttccgcaacgatgcctgatgccatccgtcgcatc
gcagttaactacctgcagtcgccggaagagattaccgttaaagtcaaaactcggaccgct
gatacaattcatcagcgtttctggctcgcgaaagggcaccacaaaatggatgctctgacc
cgcatcctggaagtggaagaaaccgacggcgtgatcatctttgtccgtaccaagagcatc
actactgagctggctgaaaaactggaagcccgcggcttcctgtcagctccgttgaatggt
gatattcctcaaaggcagcgtgaactcaccgtcggcagactgaaagccggccatgtcaac
attgtcatcgctaccgatgtcgctgcccgcggactggacgtagaccgtatcagtcacgtg
atcaactacgacctgccgggggactccgaagcctacgtacaccgcatcggacgaacggga
cgtgccggccgaaccggccacgcgatcactttcgtttccccgcgtgaaacccgctcactg
tccaacattgaacgtgctatcaaacacaaactggaacggatggacctgcccacgatcgag
gtgatcaatgaacgtcgcaccgctcgtttcaaggaatccatcaccagcgccatgagtgct
cccgattttggcatgttccgcaagctgctcagcgaataccaggctgacaccagctgcccg
gaaatcgaaatcgccgctgccctggcctgcctgcatcagggcaaacgcccgctgtttctc
caggaaacaacccggcaggaaacacgcaaaccgcgcgaaaccgaaggccacaaaccaccg
caaggcgaacgtcgttttaacaaagacaaagaccgtccggagcgtccccgcaaacgggaa
ttcagcgattcaccggaagagggtatggaacgcttcaagctgcaggtgggccacaaccat
ggtgtcaaacctggcaacatcgttggtgctatcgcaaacgaagccaacctggacagtcag
tacatcggccgcatcaatatctttgatgaattcagtaccgtcgatcttcccgaagggatg
ccccggaatatcttccgtgctctgaagaacgtctgggtggcaggtcagcagttacggatc
tcccgctgggaatcccccgaaacctttgccggtaagaagaaacgcttcaaaggcaaacag
aaacacaagcagcagaaagcctaa
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