Gordonia iterans: C6V83_04955
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Entry
C6V83_04955 CDS
T05370
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
git
Gordonia iterans
Pathway
git03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
git00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C6V83_04955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
git03400
]
C6V83_04955
Enzymes [BR:
git01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C6V83_04955
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C6V83_04955
DNA repair and recombination proteins [BR:
git03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C6V83_04955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
TetR_C_18
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
DUF5795
Motif
Other DBs
NCBI-ProteinID:
AVL99720
UniProt:
A0A2S0KDK3
LinkDB
All DBs
Position
1062476..1063456
Genome browser
AA seq
326 aa
AA seq
DB search
MPELPEVAALAAFLDGRTAGLPVRRVDVASLSVLKTADPPYTALAGRTVSSVGRIGKYLI
VTTVPGLSTGSRGVGSGSRGVGSSSGGVGSSSGEEPTIALVIHLSRAGWIRWSEHLSPKP
PRPGGKGPIALRVHCGLPGEGFDVTEAGTQKRLAAWVVRDPHEIERIATLGPDALALSRD
EFAALLAGDSPTSPGTGGRRLKTVLTDQRTLSGIGNAYSDEILHAARLSPFATAKSLNDD
AVTALYDAMRATLLDSTARLEGRGAATMKSEKRTGLKVHARTGLPCPDCGDTVREVSYAD
RSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcttcccgaagtcgctgcgctcgccgcattcctcgacggccggacggccggc
ctgcccgtccgccgggtcgacgtcgcgtcgttgtcggtgctcaagaccgccgacccgccg
tacaccgcgctcgccggccggacggtctcgtcggtcggccggatcggcaagtacctgatc
gtcaccaccgtgccgggcctttcgacgggctcaaggggcgtcgggtcgggctcaaggggc
gtcgggtcgagttccgggggcgtcgggtcgagctcaggggaggaaccgacaatcgccctg
gtgatccatctgtcgcgcgcgggctggatccgctggagcgagcacctctcgccgaagccg
ccgcggcccggtggcaagggcccgatcgccctgcgggtgcactgcggcctgccgggggag
ggcttcgacgtgaccgaggcaggcactcagaaacgcctcgccgcctgggtggtccgcgac
ccgcacgagatcgagcgcatcgccacgctcggtccggatgcgctcgcgctctcacgagac
gagttcgccgcactcctcgccggcgactccccgacgtcgcccgggacgggtggaaggcgg
ctcaagaccgtcctcaccgaccagcgcacgctgagcgggatcggcaacgcctactccgac
gagatcttgcacgccgcgcgactctcgccgttcgcgaccgcgaagtcgctgaacgacgac
gccgtcaccgcgctgtacgacgcgatgcgcgccaccttgctcgattcgaccgcgcgcctg
gagggccgcggcgccgcgacgatgaaatccgagaagcgcaccggactgaaagtccatgcc
agaacgggacttccgtgcccggactgcggcgacaccgtccgcgaggtctcgtacgcggac
cgctccttccagtactgcccaacctgccagaccggcggcaaggtgctcgccgaccgcagg
atgtcgcggctgctcaagtag
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