Gordonia iterans: C6V83_08065
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Entry
C6V83_08065 CDS
T05370
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
git
Gordonia iterans
Pathway
git03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
git00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6V83_08065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
git03019
]
C6V83_08065
03009 Ribosome biogenesis [BR:
git03009
]
C6V83_08065
Enzymes [BR:
git01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C6V83_08065
Messenger RNA biogenesis [BR:
git03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C6V83_08065
Ribosome biogenesis [BR:
git03009
]
Prokaryotic type
rRNA helicases
C6V83_08065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
P-loop_SecA
AAA_22
CMS1
UvrA_inter
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AVM00233
UniProt:
A0A2S0KEY8
LinkDB
All DBs
Position
1754891..1756645
Genome browser
AA seq
584 aa
AA seq
DB search
MSSTENPSSAASTPDSDTFDGYGIDERVRAALDEVGYETPSPIQAATIPPLMDGRDVVGL
AQTGTGKTAAFAIPILSRLNTQARKPQALVLAPTRELALQVAEAFGRYSSKMPEVKVLPI
YGGQSYGIQLSGLRRGAQVIVGTPGRVIDHLDKGTLDLSELEFLVLDEADEMLSMGFAED
IERILADTPDHKQVALFSATMPPTIGRLARKYLNDPQEVKVKSQTSTASNITQRYLQVSH
QRKLDALTRVLEVEDFDGMIVFVRTKSATEELAERLRSRGLSAAAINGDMVQAQRERTIN
QLKDGSLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFV
SPRERHLLRAIERATRQELTEIDLPSVEDVNAQRVVKFGESITRNLESEHLDMFRGLIEA
YARDNDVAMADIAAALALETRDGGFLMAPDPPAGDRRERDRGERRERTPKNGGRFATYRI
AVGRRQKVSPGAIVGAIANEGGLTRADFGNISIRDDFTLVELPEDLDNETLAMLKHTRIG
KYPIDIRRDQGPPGQRGGRKSGGYKGKKDHWGKRPPRVAGRGRG
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcaccgaaaaccccagttcagctgctagcactccggactcggacaccttcgac
gggtacgggatcgacgagcgcgtgcgcgcagctctcgacgaggtcggatacgagactccg
tcgcccattcaggccgccaccattccgccgctgatggacggccgcgacgtcgtcggcctg
gcgcagaccggaacgggcaagaccgccgccttcgccattcccatcctgtcgaggctgaac
acgcaggccaggaagccgcaggcgctggtgctcgcgcccacccgcgagctggcgctgcag
gtggccgaggccttcggccggtactcgtcgaagatgccggaagtgaaggtcctgccgatc
tacggcggtcagagctacggcatccagctgtccgggctgcggcgcggcgcgcaggtgatc
gtcggtacccccggccgcgtgatcgaccacctcgacaagggcaccctggacctgtccgaa
ctggagttcctggtgctcgacgaggccgacgagatgctgtcgatgggcttcgccgaagac
atcgagcggatcctggccgacacccccgatcacaagcaggtggcgctgttctcggccacc
atgccgccgaccatcggccggctggcgcgcaagtacctcaacgatccgcaggaagtgaag
gtcaagtcgcagacctccacggcgtcgaacatcacgcagcgctacctgcaggtctcgcac
cagcgcaagctcgatgcgctgacgagagtgctggaggtcgaggacttcgacggcatgatc
gtcttcgtccgcaccaagtcggcgaccgaggaactcgccgaacgcctgcgctcgcgcggc
ctgtcggcggcggcgatcaacggtgacatggtgcaggcgcagcgagagcgcaccatcaat
cagctcaaggacgggtcgctggacatcctggtggccaccgacgtcgccgcccgcggtctc
gacgtcgaccggatctcgcacgtggtgaactacgacattccgcacgacaccgagtcgtac
gtccatcgcatcggccggaccggccgcgccggtcgctccgggaccgcgttgctgttcgtc
tcgccgcgcgagcgccacctgttgcgcgccatcgagcgggcgacccggcaggaactcacc
gagatcgatctgccctcggtggaggacgtcaacgcgcagcgcgtggtgaagttcggcgag
tcgatcacccgcaacctcgaatccgagcacctggacatgttccgcggtctgatcgaggcg
tacgcccgggacaacgacgtcgcgatggccgacatcgccgcggcgctggcgctggagacc
cgcgacggcggtttcctgatggccccggatccgcccgcgggcgaccgccgggagcgggac
cgcggcgagcggcgcgagcgcacgcccaagaacggcggacggttcgcgacctaccggatc
gcggtcggccgccggcagaaggtgtccccgggcgccatcgtcggcgcgatcgccaatgag
ggcggcctgaccagggccgacttcggcaacatcagcatccgcgacgatttcacgctggtg
gagctccccgaggatctcgacaacgagaccctcgcgatgctcaagcacacccggatcggc
aagtatccgatcgacatccgccgcgaccagggcccgcccgggcagcgtggcggtcgcaag
agcggcggatacaagggcaagaaggaccactggggcaaacggcccccgcgggtcgccggt
cgcggtcgcggctga
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