Gordonia iterans: C6V83_12935
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Entry
C6V83_12935 CDS
T05370
Name
(GenBank) DEDD exnuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
git
Gordonia iterans
Pathway
git03030
DNA replication
git03430
Mismatch repair
git03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
git00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C6V83_12935
03430 Mismatch repair
C6V83_12935
03440 Homologous recombination
C6V83_12935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
git03032
]
C6V83_12935
03400 DNA repair and recombination proteins [BR:
git03400
]
C6V83_12935
Enzymes [BR:
git01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C6V83_12935
DNA replication proteins [BR:
git03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C6V83_12935
DNA repair and recombination proteins [BR:
git03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C6V83_12935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
UVR
DEDDh_C
GIY-YIG
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AVM01024
UniProt:
A0A2S0KH73
LinkDB
All DBs
Position
2822346..2824124
Genome browser
AA seq
592 aa
AA seq
DB search
MSQLSFADLPDDEEFATASLLHTTLVVIDLETTGGSAERDAITEIGAVKIRGGEVVGEFA
TLVDPGRAIPPQIVSLTGITSAMVHDAPPIEEVLPAFFEFARGTILVAHNARFDIGFLKR
AAARQHLPWPFPATLCTVVMARRILSRDEAPTVKLSALADLFDVSVKPTHRALDDARATV
DVFHRLLERVGNQGVHTYRDLTRYLPRVSPAIRAKRALAAGLPHRPGVYLFRGPGEEVLY
IGTAVDLARRVGSYFSGDPRPRMAEMVGLTQRVDHIECAHGLEAGVRELTLLGAHKPSFN
RRSRNPQRGWWITLTAERFPRLKVSRSPGEVAVGPIAQRGAAADIADVIAGAAGLRTCTA
GLTSADHHFCIGTAGAATLPDPLVAAMPGACRAASDRPQTVPDYLPRVRAAHDLVLGFDD
ELLDRLTARLEQLARSRRFESAARARDRLAATIDALARCQRLAAIARLPELVLARPGTAG
GWEFAVVRFGRLAGAGCAPPGAAPMPVVEAVVAGARTVPAPATGDGPLSGAPPEEVGLIA
RWIDEPGTRLVSVDGELSCPVGSAQRRREFSRAARQARELAPNRTGSFRLGA
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaattgagcttcgccgacctccccgacgacgaggagttcgcgaccgcctcgctg
ctgcacaccaccctggtcgtcatcgatctggagaccaccggcggcagcgccgagcgcgac
gcgatcaccgagatcggcgcggtcaagatccgcggcggcgaggtcgtcggcgagttcgcc
acgctcgtcgatcccggccgcgcgatcccgccgcagatcgtctcgctcaccgggatcacg
agcgcgatggtgcacgacgccccgcccatcgaggaggtcctgcccgcgttcttcgagttc
gcccgcggcacgatcctcgtcgcccacaacgcccgattcgacatcggcttcctcaagcgc
gccgcggcccgccagcacctgccgtggccgttccccgccacactgtgcaccgtggtgatg
gcgcgccggattctcagccgcgacgaggcgcccaccgtcaaactcagcgcgctggccgac
ctgttcgacgtgtcggtgaaaccgacacaccgagcactcgacgacgcccgggccaccgtc
gacgtcttccaccggctcctcgaacgcgtcggcaaccagggcgtccacacctaccgggac
ctcacccgctacctgccgcgcgtgtctccggcaatccgcgccaagcgcgcgctggccgcc
ggcctccctcaccggcccggcgtgtatctgttccggggccccggagaggaggtcctctac
atagggaccgccgtggacctggcgcggcgcgtcggcagctacttctccggagacccccgg
ccacggatggcagaaatggtcgggctgacgcagcgcgtggatcacatcgaatgcgcgcac
ggcctggaggccggcgtccgcgaactcacgctgctcggcgcccacaagccgtcgttcaac
cgccgctcccgcaacccgcagcgcggctggtggatcacgctcaccgccgagcggttcccg
cgcctcaaggtctcccggtctccgggcgaggtcgccgtcggcccgatcgctcaacgcggc
gcggccgccgacatcgccgacgtcatcgccggcgcggccgggttgcgcacctgcacggcc
ggtctcaccagcgccgaccatcacttctgcatcggcaccgccggtgcggccacgctcccc
gatccactcgtcgccgcgatgccgggcgcctgccgggccgccagcgaccggccgcagacg
gtcccggactatctgccgcgggtgcgggcggcacacgacctcgtcctcgggttcgacgac
gagttgctcgaccgcctcaccgcccgattggagcaactcgcccgatcacgtcgcttcgaa
tcggcggcccgcgcccgcgaccggctcgccgccaccatcgacgcgctggctcgctgccag
cgcctggcggcgatcgcccggctccccgagctggtcctcgcccggcccggcaccgccggc
ggctgggagttcgccgtggtccgcttcggccgcctcgccggcgccggctgcgctccgccg
ggcgcggcgccgatgccggtggtcgaggcggtcgtcgccggagcccgcaccgtgccggct
ccggccaccggggacggaccgctgtccggtgccccgccggaggaagtcggcctgatcgca
cgctggatcgacgagccgggcacacgcctggtgtccgtcgacggcgagttgtcgtgcccg
gtcggttcggcccagcgacggcgggagttcagccgcgccgcgcggcaggcccgtgagctc
gcgccgaaccgaaccggctcgtttaggctcggggcatga
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