Gordonia iterans: C6V83_15425
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Entry
C6V83_15425 CDS
T05370
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
git
Gordonia iterans
Pathway
git03420
Nucleotide excision repair
git03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
git00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C6V83_15425
03430 Mismatch repair
C6V83_15425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
git03400
]
C6V83_15425
Enzymes [BR:
git01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C6V83_15425
DNA repair and recombination proteins [BR:
git03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C6V83_15425
MMR (mismatch excision repair)
Other MMR factors
C6V83_15425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AVM01425
UniProt:
A0A2S0KIB8
LinkDB
All DBs
Position
complement(3342982..3346362)
Genome browser
AA seq
1126 aa
AA seq
DB search
MTDRPLNPIGARSLAAALGLPPPTDEQVEVIEAPMEPMLVVAGAGAGKTETMASRVVWLV
ANRLVAPDEVLGLTFTRKAASELGARIRRRLSMLAGSPALLEWDPGGELAAVLRSADAEV
STYHAYAGRLIADYGLLLPVEPSSTLLSETELWQLAFSVVTTWPHELNTAKVPSSVTEAV
LNLYSEMAEHLVDDDALAAAGADLCTLIDTLPKGPRQRAEPSQALRNIQAVTEERRAFLP
LVQALRDKMAEQGALDFGSQMSLAARLATTRPEVVTAERAGIKAVLLDEYQDTGHAQRLL
LSALFGGGEPLAVTAVGDPIQSIYGWRGASAANLPRFAQDFPRADGSGAHRRELLTSWRN
CRGTLYLANEVSAQLRARGVPVSTLRPREDAPEGTVRLALTETVADERRWIADHVEAAYR
AAEEAQRPPATVAILVRRNEDSAPMAAELSQRGIPVEVVGIGGLLHVPEITDIVATLRLM
ADPMAGTAAMRLLTGARWQLGAADLAALWRRARDLAAGADAPVGGAVSSREQLDEALASA
LPAESVDAAGLGDALVDPGERERYSAAGYERIRAFGRELERLRRRIGQPLPELVADVEQT
IGVAVEAQIRARRMRGAITGREHLDAFADYVAAYADRPGATLPGLLAFLDAAESVEKGLE
AGQVEVAEERVQILTVHAAKGLEWDLVAVPHLARGIFPSAKADSTWLGSARELPAALRGD
LATGGADGYPALDLSGLGDRKELEEALAEHKDAIKARRLDEDRRLLYVALTRAKQTLLVS
AHWWSETGDKPRGGSDFYDELAELVRGAGSTTAGPAVGGAAESGGAALGHRVMSVDVDAP
APGADAENPMTAEPVTAAWPVDRLGDRRPAVLAAARAVDDARVARGLVALPAPETDDPEI
AAWHAEVSALLDERRRAGAATVDVELPAQLSVSQLVELGADEQAFAARLRRPVPFRPNPM
ARRGTAFHAWVERRFGATRLLDLDELPGAADESAVDDDLELLRAAFLASEWAHRTPLEVE
VGFETVIGETVVRGRMDAVFADGDGYLVVDWKTGAVPEPAKRGPLELQLAAYRVAWARLR
GVDVGAVRAAFVYVRHGFTLEPDTLPGAPELAGLLAAAPPDAGGDT
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccggccgctgaacccgatcggcgcgcgctcgctcgccgccgccctcggactg
ccgccgccgaccgacgagcaagtggaggtgatcgaggcgccgatggagccgatgctggtg
gtcgccggtgccggcgcgggcaagaccgagacgatggcctcccgcgtggtgtggctcgtc
gccaacaggctggtcgcccccgacgaggtcctcggcctcaccttcacgcgcaaggccgcc
agcgagctcggtgcgcgcatccgccgccggctgtcgatgctcgccggatcgccggcactg
ctcgagtgggacccgggcggcgagctggcggcggtgctgcgcagcgcggacgccgaggtg
agcacctaccacgcctacgccggccggttgatcgccgattacgggctgctgttgcccgtc
gaaccgtcgtcgacgctgctgagcgagacagagctctggcagctggcgttctcggtggtc
accacctggccgcacgagctgaacaccgccaaggtgccgtccagcgtcaccgaggcggtg
ctgaacctgtactcggagatggccgagcacttggtcgacgacgacgccctggccgcggcg
ggggccgatctgtgcacgctgatcgacaccctcccgaagggaccgcgccagcgcgccgag
ccgagtcaggcactccggaacatccaggcggtgaccgaggagcggcgcgcctttctcccg
ctggtgcaggcactgcgggacaagatggccgaacagggcgctctggacttcggcagccag
atgtccctcgccgcacggctggcgaccacccggcccgaggtggtcaccgcggaacgggcg
ggcatcaaggccgtcctgctcgacgagtatcaggacaccgggcacgcgcagcggctgctg
ctgtcggccctgttcggcggtggggagcctctcgcggtgaccgccgtcggcgatccgatt
cagtcgatctacggctggcgcggcgcctcagcggccaatctgccccgcttcgcccaggac
ttcccgcgcgccgacggctcgggcgcgcaccgccgggaactgctcaccagctggcgcaac
tgccggggcacgctctacctggccaacgaggtgtctgcgcagctgcgggctcggggcgta
ccggtctccaccctgcgcccgcgggaggatgcgccggagggaacggttcggctcgccctg
accgagacggtggccgacgagcgccggtggatcgccgatcatgtggaggccgcctaccgg
gccgccgaagaggcgcagcgtcctcccgccaccgtcgcgatcctggtgcgtcgcaacgag
gattcggcgccgatggcggccgagctttctcagcgggggattccggtcgaagtggtcggg
atcggcgggctgctgcacgtcccggagatcaccgacatcgtcgcgacgctgcgcctcatg
gccgatccgatggcggggaccgccgcgatgcggctgctgaccggtgcgcgctggcagctc
ggcgccgccgatctggcggcgctgtggcgccgggcccgcgacctcgcggccggggcggac
gcgccggtgggcggtgcggtctcgtcgcgggagcagctggacgaggcgctcgcgtcggcg
ttgcccgccgaatccgtcgacgccgcgggactgggtgacgccctggtcgacccgggggag
cgcgagcggtactcggcggccgggtacgagcggatccgagccttcgggcgcgagctggaa
cggctgcgccgccggatcggccagcccctccccgaactggtcgccgacgtcgagcagacc
atcggtgtcgccgtggaggcacagatccgggcgcggcggatgcgcggagcgatcaccggt
cgcgagcatctggacgccttcgccgactacgtcgcggcctacgccgatcggcccggggcc
acgctgcccgggctgctcgccttcctggatgccgccgagtcggtggagaagggcctggaa
gccgggcaggtggaggtggccgaggaacgcgttcagatcctcaccgtgcacgctgccaag
ggcctagagtgggatctggtcgcggtgccgcacctggcacgcgggatcttccccagcgcc
aaagccgactccacgtggctcggatcggcgcgggaactgccggccgcgctgcgcggcgac
ctcgcgaccggcggtgcggacggctatccagcgctggacctgtccggactcggcgatcgc
aaggaactcgaagaggccctcgccgagcacaaggacgccatcaaggcccggcggctcgat
gaggatcgtcgcctgctctacgtcgccttgaccagggcgaaacagacgctgctggtctcg
gcgcactggtggtcggagaccggtgacaagccgcgcggcggttcggacttctacgacgag
ctcgccgaactcgtccggggcgcgggctcgacgacggcgggaccggcagtcggcggagcc
gccgaatccggtggtgccgcgctcggccaccgggtgatgagcgtcgacgtcgacgcaccc
gcgcccggcgcggatgcggagaatccgatgaccgcggagccggtgaccgccgcgtggccg
gtggaccggctcggggatcgtcgcccggccgtgctcgccgccgcccgggcggtggacgac
gcgcgggtcgcacggggcctggtcgccctgcccgcccccgagaccgacgacccggagatc
gcggcctggcacgccgaggtgagtgcgctgctggacgaacgacgacgcgccggcgccgcg
accgtcgacgtcgaactgcccgcgcagctgtcggtgagccagctcgtggagctcggcgcc
gacgagcaggccttcgccgcgcgactgcgccgtcccgtcccgttccggcccaacccgatg
gcccgccgcggcaccgcgttccacgcgtgggtggagcggcgcttcggggccacccggctg
ctggacctcgacgaactgccgggcgcggcagacgagtccgcggtcgacgacgatctggag
ttgctgcgcgcggcgttcctcgcctcggagtgggcgcaccgcacaccgctggaagtggag
gtcggattcgagacggtgatcggcgagaccgtggtgcgcggccggatggacgcggtgttc
gccgacggcgacggctacctcgtcgtcgattggaagaccggtgcggtgcccgagcccgcc
aaacgcggtccgctggagctgcagctggccgcgtaccgggtcgcgtgggcgcggctgcgg
ggcgtggacgtgggggccgtgcgggcggcgttcgtctacgtccggcacggcttcacgctg
gaacccgacaccctccccggcgcgccggaactggccgggttgctcgccgcggcgcctccg
gatgcgggcggtgacacctga
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