Gordonia iterans: C6V83_16585
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Entry
C6V83_16585 CDS
T05370
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
git
Gordonia iterans
Pathway
git03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
git00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C6V83_16585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
git03021
]
C6V83_16585
03400 DNA repair and recombination proteins [BR:
git03400
]
C6V83_16585
Enzymes [BR:
git01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C6V83_16585
Transcription machinery [BR:
git03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C6V83_16585
DNA repair and recombination proteins [BR:
git03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C6V83_16585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AVM01631
UniProt:
A0A2S0KJ06
LinkDB
All DBs
Position
complement(3678477..3682430)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAWVITSVDDELRHSELSTREAEITVERKAIMDDLEAALAERQSKLEAD
LAELEAEGAKADAKRKVRDAAERELKRMRDSAGREVEALDEIWDKFTKLTPGELIVDERL
YRELEDRFGEYFTGAMGAEAIKRLLEDFDIDAEAESLRETIRTGKGQKKLRALKRLKVVA
AFQQSGNNPRAMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVNGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNLAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEKEDAEGAYT
PATGDDVERGVYSSPAEAIMAVDRGVLSVQAPIKVRLSDLRPPADVEAAEFDGKWRKGQE
WELHTTLGRVLFNELLPPDYPFVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVAMSDVLVPPAKAEILDRYEAQADTLEKKYQRGGLTKDERRAALVELWQAA
TEEVGKALEDYYPEDNPITMIPKSGATGNMTQVRNLSGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGNERGIVVPI
AALHGDQLVRDQHVETSAYARTLAADAVDADGNVVVERGHDLGDPAIEKLIEAGITEVKV
RSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVGD
DITGGLPRVTELFEARVPKGKAPIAEVAGRIRLEEGERFYKITIIPDDGSEEQVYDKLSK
RQRLHAVVQPDGTERPLADGDHVEVGEPLMEGPADPHEVLRVMGPRQVQIHLVNEVQEVY
RRQGVSIHDKHIETIVRQMLRRVTIIDSGATEFLPGSLTERAEFEAANRAVVAEGGEPAS
GRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINSRSDKLVGLKENVIIGKLIPAGT
GINKYRNIQVEPTEEARAAAYALPSYDDTYFSPDGTFGAPSGAAVPLDDYDYGNDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgaactgaagatcggcctggccacggccgatgacatc
cacaactggtcgtacggcgaggtcaagaagccggagaccatcaactaccgcacgctgaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggtgtc
gaggtgaccaaggccaaggtgcgccgtgagcgcatgggccacatcgagctcgccgctccg
gtcacccacatctggtatttcaagggtgtgcccagccggctcggctacctgctcgatctg
gcgccgaaggatctcgagaagatcatctacttcgccgcatgggtcatcacctcggtggac
gatgaactgcgccactcggagctctcgacccgcgaggccgagatcaccgtcgagcgcaag
gcgatcatggacgacctcgaagccgccctggccgagcgccagagcaagctcgaggccgat
ctggccgagctggaggccgagggcgccaaggccgacgccaagcgcaaggtccgggacgcc
gctgaacgcgagctcaagcgcatgcgtgactccgcgggccgcgaggtcgaggcgctcgac
gagatctgggacaagttcaccaagctgaccccgggtgagttgatcgtcgacgagcggctc
taccgcgagctcgaggaccgcttcggcgagtacttcaccggcgccatgggcgccgaggcc
atcaaacgtctgctcgaggacttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgcaccggcaagggccagaagaagctgcgtgcgctgaagcgactcaaggtcgtggcc
gcgttccagcagtcgggcaacaacccgcgcgccatggtgctcgacgccgtgccggtgatc
ccgccggagctgcgtccgatggttcagctcgacggcggccggttcgccacctcggacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgatctg
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccgtccggtcaacggaccgggcaaccgtccgctgaag
tcgctgagcgatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgctcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcgctggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaacctggcgcagaacatcaagtcggccaagcgcatggtcgagcgtcagcgc
ccgcaggtgtgggacgtcctggaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgccgacgctgcaccgcctgggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtgtgtgaggctttcaacgccgacttcgacggcgaccag
atggccgtgcacctcccgctgtccgcagaggcgcaggccgaggcacggatcctgatgctc
tcgagcaacaacatcctgtcgccggcatcgggccgtccgctcgccatgccgcgtctggac
atggtgaccggtctgtactacctgaccaccgagaaggaggacgcggagggcgcgtacacc
ccggcgaccggagacgacgtcgagcggggcgtctactcgagcccggccgaggccatcatg
gccgtcgaccgcggtgtgctcagcgtgcaggcgccgatcaaggtgcggctgtcggacctg
cgtccgccggccgacgtcgaggccgccgagttcgacggcaagtggcgcaagggtcaggag
tgggagcttcacaccaccctgggccgggttctcttcaacgagctgctgccgccggactac
ccgttcgtcaacgagcagatgcccaagaagcgtcaggccgtgatcatcaacgatctggcc
gagcgttacccgatgatcgtcgtcgcgcagaccgtggacaagctcaaggacgtgggcttc
tactgggcgacccgttcgggcgtcaccgtggccatgtccgacgtgctggtgccgccggcc
aaggcggagatcctcgaccggtacgaggcgcaggccgacacgctggagaagaagtaccag
cgcggtggtctgaccaaggacgagcgtcgtgcggcgctggtcgagctgtggcaggccgcg
accgaagaggtcggcaaggcgctcgaggactactaccccgaggacaacccgatcacgatg
atcccgaagtcgggggcgacgggcaacatgacccaggtccgcaacctgtcgggcatgaag
ggtctggtgaccaacccgaagggcgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgacggtggccgagtacttcatcaacacgcacggcgcacgcaagggtctggcc
gacacggcgctgcgcaccgccgactcgggttacctgacccgtcgtctggtggacgtgagc
caggacgtcatcgtgcgcgagaccgactgcggcaacgagcgcggcatcgtcgtgccgatc
gcggccctgcacggtgaccagctggtccgcgatcagcacgtggagacctccgcgtacgct
cgcaccctggccgccgacgcggtcgacgcggacggcaacgtcgtcgtcgagcgtggtcac
gacctgggcgatccggccatcgagaagctgatcgaggcgggcatcaccgaggtcaaggtc
cgttcggtcctcacctgcggcaccggcaccggcgtctgcgccatgtgctacggccgcagc
atggccaccggcaagctcgtcgacatcggtgaggccgtcggcatcatcgcggcgcagtcg
atcggtgagcccggcacccagctgaccatgcgcaccttccaccagggtggcgtcggcgac
gacatcaccggtggtctgcctcgtgtcaccgagctcttcgaagcccgcgtgcccaagggc
aaggcgccgatcgccgaggtcgccggccgcattcgcctggaagagggcgagcgcttctac
aagatcacgatcatccccgatgacggatccgaggagcaggtctacgacaagctgtccaag
cgtcagcgcctgcacgcggtggtgcagccggacggcaccgagcgtccgctggccgacggc
gaccacgtcgaggtcggtgagccgctcatggagggtccggccgatccgcacgaggtgctc
cgcgtgatgggcccgcgtcaggtgcagatccacctggtcaacgaggtgcaggaggtctac
cgccgtcagggcgtgtcgatccacgacaagcacatcgagaccatcgtgcgccagatgctg
cgtcgcgtgaccatcatcgactccggtgccaccgagttcctgcccggttcgctcaccgag
cgcgccgagttcgaggcggccaaccgcgccgtcgtcgccgagggcggcgagccggcgtcg
ggtcgcccggtgctcatgggtatcaccaaggcctcgctggccaccgactcgtggctgtcg
gcggcgtcgttccaggagaccacgcgtgtcctgaccgacgcggccatcaacagccgcagc
gacaagctggtgggcctgaaggagaacgtgatcatcggtaagctcatcccggccggtacc
ggcatcaacaagtaccggaacatccaggtggagccgaccgaggaggcccgcgcggccgcc
tacgcactcccgtcgtacgacgacacctacttcagcccggacggcaccttcggtgcgccg
tcgggagctgcggttccgctcgacgactacgattacggcaacgactaccgctaa
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