Gekko japonicus (Schlegel's Japanese gecko): 107105636
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Entry
107105636 CDS
T04299
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03013
Nucleocytoplasmic transport
gja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107105636 (UPF1)
03015 mRNA surveillance pathway
107105636 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gja03019
]
107105636 (UPF1)
Enzymes [BR:
gja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107105636 (UPF1)
5.6.2.5 RNA 5'-3' helicase
107105636 (UPF1)
Messenger RNA biogenesis [BR:
gja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107105636 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
107105636 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
107105636
NCBI-ProteinID:
XP_015261122
UniProt:
A0ABM1JI35
LinkDB
All DBs
Position
Un
AA seq
1128 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGGGGGGAVAQ
GNPGAPGGGGGVGGPPSAVAVGQLAAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDE
EDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVT
LHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQW
QPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEP
QHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPK
TDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
DYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSNMYFQTHDQIGVISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
NPKGKTSRGGRQKNRFGMPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctgaccttcctggacaccgaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcactttg
cccagtcagacccagacgccgcccgggggaggaggcggaggaggaggcgccgtcgcccag
ggaaaccccggggcgcccggaggaggaggcggcgttggggggccgccctcggccgtcgct
gtcgggcagctggcagcccaggtcaacgggcctgatggcattctccagaatggtgccgtg
gacgataatgtggcgaagaccagccagctcttggcagagctcaattttgaggaagacgag
gaggacacgtattataccaaagaccttcccgtgcatgcttgcagctactgcggcatccat
gacccagcttgcgtggtctactgcaacaccagcaagaagtggttctgcaacggtcgcggg
aatacctctggcagccacatcgtgaatcatcttgtgagggccaaatgtaaggaggtgacg
cttcacaaagacgggcccctgggggagacggtcttggaatgctacaactgcggttgccgg
aacgtgttcctcctcggcttcatcccagccaaggccgattcagtggtggttctgctgtgc
aggcagccttgtgccagtcagagcagcttaaaggatatcaactgggacagttcgcagtgg
cagcccctgatccaggaccgctgcttcctttcctggctagtcaagatcccttccgagcag
gagcagctgagagctcggcagatcacggctcagcagataaacaagctggaggagctttgg
aaggaaaacccgtccgccaccctcgaggacctggagaaacctggtgttgacgaggagccc
cagcatgtcctgcttcgatacgaggacgcttatcagtaccagaacatctttgggcctcta
gtcaagcttgaggcagactacgacaagaaactcaaggagtcccagacccaagacaacatc
accgtgcgatgggatctgggcttgaacaagaagagaatcgcttacttcaccttgccgaag
actgattcagatatgcgtctgatgcagggagacgaaatctgcctgaggtacaaaggcgat
ttggccccactgtggaaaggaatcggccatgtcattaaagttccggataattatggcgat
gagatagccatcgagctgagaagcagcgttggcgctcccgtggaggtgacccacaacttc
caggtggactttgtgtggaagtcgacctcctttgacagaatgcagagcgcgctcaaaaca
tttgcggtggatgaaacctccgtgtccggctacatctaccacaagctgcttggtcacgaa
gtggaagatgtcattatcaagtgtcagctgccgaaacgcttcacggcacagggactccct
gacctcaatcactctcaggtgtatgctgtgaagaccgtcttgcagcgtccgttgagcctt
atccagggtcctcctgggacaggcaaaactgtgacatcagctaccattgtttaccacctg
gccaggcaaggaaatgggcctgttctggtttgcgccccgagtaacatagctgtggaccag
ctgactgagaagatacatcagaccggactgaaggtggtgcgtctgtgtgccaagagccgg
gaggcgattgactccccagtgtctttcctggccctgcacaaccagatcagaaacatggac
agcatgcccgagctccagaaactgcagcagctgaaagatgagactggagagctgtcctct
gcggacgaaaagcgctaccgggcgctgaagcgaacggccgagcgggaattgctgatgaac
gcggacgtcatctgctgcacgtgtgtgggagccggcgacccaaggctggccaagatgcag
ttccgctccattttgattgacgaaagcactcaggccactgagccagagtgtatggtacct
gtcgtccttggagcaaagcagttgatcctggtgggtgaccattgccagcttggccccgtc
gtgatgtgcaagaaggcggccaaagcgggcctgtcccaatccctcttcgagcggctggtg
gtactggggatccggcccatccgcctgcaagtgcagtatcgcatgcaccctgccctgagc
gcgttcccttccaatatcttttacgaggggtctctccagaatggcgtcacagcagcggac
cgtgtgaaaaagggatttgatttccagtggcctcagccagataagcccatgtttttctac
gtaacccaagggcaagaggaaattgcaagctctggcacatcttacctgaacaggacggag
gctgcaaacgtggagaagatcaccaccaagctgctgaaagctggcgcgaaaccggaccag
attggcatcatcaccccctacgaggggcagcgctcctacctggtgcagtacatgcagttc
agcggctcccttcacaccaagctttaccaggaggtggagattgccagcgtcgatgccttc
caaggacgggagaaagacttcatcatcctgtcctgcgtcagagccaatgaacatcaaggg
atcggtttcctgaacgatccccggcgcctcaacgtcgctctcaccagagcaagatacggc
gtcattatcgtcggcaacccaaaggccctgtccaagcagcctctctggaaccacctgctg
gactactacaaggagcagaaggtgttggtggaggggcccctgaacaacctccgcgagagc
ctcatgcagttcagcaagccccggaagcttgtgaataccatcaacccgggagcccgattc
atgacgactgccatgtacgacgcccgcgaagctattatccctggatcagtctacgaccgc
agcagccaaggccgcccctccaacatgtacttccaaacgcacgatcagatcggggtgatc
agcgccgggccgagccacgtcaccgccatgaacattccgatcccgttcaacctggtgatg
ccgccgatgcctccgcctggatattttggacaggccaacgggccagctgctggtcgcggg
aatcccaaaggcaagaccagccgtggcggacgccagaagaatcgtttcgggatgccgggg
gccagccagtcgaacctccccaacagccaggccagtcaagacgtggtgtcgcagcccttc
tctcagggtcccttgactcagggctacatctccatgagccagccttcgcagatgagccag
ccaggcctctcgcagccggaactgtcgcaggacagttatcttggcgatgagtttaagtct
cagatcgacgtggccctgtcgcaggattctacctaccagggggaacgcgcatatcaacat
ggtgtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
