Gekko japonicus (Schlegel's Japanese gecko): 107106120
Help
Entry
107106120 CDS
T04299
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03008
Ribosome biogenesis in eukaryotes
gja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107106120 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
107106120 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gja03021
]
107106120 (XRN2)
03019 Messenger RNA biogenesis [BR:
gja03019
]
107106120 (XRN2)
03009 Ribosome biogenesis [BR:
gja03009
]
107106120 (XRN2)
03016 Transfer RNA biogenesis [BR:
gja03016
]
107106120 (XRN2)
Transcription machinery [BR:
gja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107106120 (XRN2)
Messenger RNA biogenesis [BR:
gja03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
107106120 (XRN2)
Ribosome biogenesis [BR:
gja03009
]
Eukaryotic type
Pre-60S particles
RNases
107106120 (XRN2)
Transfer RNA biogenesis [BR:
gja03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
107106120 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
107106120
NCBI-ProteinID:
XP_015261697
UniProt:
A0ABM1JJR0
LinkDB
All DBs
Position
Un
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVSCTEEKPKECNGIKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVEATEEKQRVREEILEKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCSQFGHEVKDCQGLPKEKQGEHDQFADCLPGQEQE
FIFIRLCVLKEYLEKELTMASLPFAFDIERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTENGFVNLQRVQMIMLAVGEVEDSIFKKRKDDEENFKRRQKD
KKKRMKREQHSMPGGQFTPQPLGRGNRSSHQPINNPRQTAFEMRMQNTTPSSSPNTSVSS
DGTPGGVKRKAEDSDSEPEPEDNIRLWEAGWKQRYYKNKFDVDASDNKFRRKVVQSYVEG
LCWVLRYYYQGCASWKWYYPFHYAPFASDFEAIADMPSDFEKETKPFKPLEQLMGVFPAA
SGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALAEV
YPDLTSEENRRNSLGGDIIFVGKHHQLHDFINELYKSGGKEPTDMPPELCHGIQGKLSLN
ENPVLPDETVHSPVPLLRDLTQNTAISINFKDPQFQEDFVFKAMVLPGAKKPSPVLKPGD
WEKTNNDGRPWRPQLGFNRDRRQVHLDQSAFRTLGHTMSRDRGQSSSGVYSNVGPPGAYN
QGGSYRPLLSRPQQIPKLLSNIRPQDSWQGPTPLFQQPPQRYDRNSGATPLLAWNRMPHS
QGPPYQQNQYQGPGGPMNYPQRPSDRRERGRQGYGRPYPLPPSSGRYNWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcccgcgtttttccgctggctgagccgcaagtatccgtccatcatcgtctcc
tgcacggaagagaagccgaaagaatgcaatgggatcaaaattccggttgacaccagcaag
ccgaatccaaatgaagtggaatttgataacttgtacttggatatgaatggcatcatccat
ccctgtacacatcctgaggataagccagcacccaaaaatgaagatgaaatgatggtggcc
atttttgagtacattgataggcttttcaacatcgtgagaccaaggcggcttctctacatg
gcaatagatggagtggctccccgtgcgaaaatgaaccagcaaagatccagaagattcaga
gcctcaaaggaaggagtagaagctacagaagagaaacagagagtaagggaagagatcttg
gagaaaggtggctatcttcctccagaagaaattaaagaaagattcgatagcaattgcatc
actccgggaacagagttcatggacaatctggcgaagtgtcttcgctattatgttgccgat
cgcttaaacaatgatccagggtggaaaaacttgacagttattttatctgatgccagtgct
cctggggaaggcgaacacaaaatcatggactacatacgaaggcaacgagctcaacccaac
cacgacccaaacactcaccactgcttatgcggagctgatgctgacctgattatgcttgga
ttagctacgcatgaacccaattttaccataatcagagaagaattcaagcctaataaacca
aagccgtgtggtctttgcagccaatttggacacgaagttaaggattgtcagggtttgccg
aaagaaaagcaaggagagcatgatcagtttgcagattgtcttcctgggcaggagcaagaa
tttatttttatccgcctatgtgttttgaaagaatacttggaaaaagagctgacgatggcc
agtttgcctttcgctttcgacattgaaagaagtatcgatgattgggtgttcatgtgtttc
tttgtgggaaatgactttcttccacatttgccctcactagagatcagggaaggagcaatt
gatcgccttgtgaatatatataaaaacgttgtccacaaaactggggggtaccttacagaa
aatggctttgtcaacctacaaagagtacagatgatcatgttagctgttggcgaggttgaa
gacagcatttttaagaagcgaaaagatgatgaggaaaatttcaaaagaagacagaaagac
aaaaaaaaaagaatgaagagagaacagcattctatgcctggtgggcaattcacaccacaa
cctttgggaaggggaaatcggtcaagccatcagccgatcaataatccaagacaaacggcc
tttgaaatgagaatgcagaacacaactccttcatcttctcctaacacaagcgtctcatcc
gatggtacgccgggaggcgttaagcgaaaagcggaggacagcgacagtgaacctgagccc
gaagataatatcaggttatgggaagccggctggaaacagagatattacaagaacaaattt
gacgttgatgcatccgataataagttccgtcgtaaagttgtacaatcttatgtggaaggg
ctttgctgggttctccgatactattatcagggatgtgcctcttggaaatggtattatcct
ttccactatgcgccgtttgcgtcagattttgaagcaattgcagacatgccctctgacttc
gaaaaggaaacaaaaccgttcaaacctctcgagcaacttatgggggtatttccagcagcc
agtggtaactttctcccaccaacttggcggaaacttatgactgatccggaatcaagtatc
attgacttctaccctgaagattttgctattgatctgaacggaaagaaatatgcttggcaa
ggtgttgccctgctgccatttgttgatgagcgccgtctgagagctgctttggcagaggtg
tatcctgacctcacttcagaagaaaacagaagaaatagccttggtggagacattatcttt
gttgggaaacatcaccagcttcatgactttattaatgagctgtacaagtccggaggcaaa
gagccaacggacatgcctcctgaactgtgtcacggtattcaagggaaactttctctgaat
gagaatccagttcttccagatgagacagttcactctcctgtgccactgctgcgtgacctg
acacagaacacagcaataagcatcaacttcaaagacccgcaattccaagaagattttgtt
tttaaggccatggtgttacctggagcaaaaaaaccgtcgccggttctgaaaccaggggat
tgggagaaaacaaacaatgatggccgaccctggaggccacagctgggcttcaaccgggac
agaagacaggtacacttggatcagtcagcatttcggacgttaggccatacaatgtcaagg
gacagaggacaatctagcagtggagtttacagcaatgtcgggcccccgggggcttacaac
cagggaggctcatacagaccgctgctgagcaggccccaacagattccaaagctgctatca
aacattagaccccaagactcctggcaggggcccacacctttgttccagcagccaccgcag
agatatgacaggaattccggggccactcctcttctggcttggaaccgcatgcctcattcc
caaggccccccgtaccagcagaaccagtaccaagggccaggggggccaatgaactaccca
caaaggcccagtgatcggagggaacggggaagacagggttacggaagaccttacccacta
ccaccctcctctggaagatacaactggaattag
DBGET
integrated database retrieval system
