Gekko japonicus (Schlegel's Japanese gecko): 107107691
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Entry
107107691 CDS
T04299
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107107691 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gja03400
]
107107691 (LIG3)
Enzymes [BR:
gja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107107691 (LIG3)
DNA repair and recombination proteins [BR:
gja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
107107691 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
FMP23
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
107107691
NCBI-ProteinID:
XP_015263477
LinkDB
All DBs
Position
Un
AA seq
992 aa
AA seq
DB search
MPFFFKVLLFCTARTLKRSEKWVSLPVQASQTCFGIQETFYNCLLLRRNHSLLLTGRRYQ
PVAQDFAFPASLHVCTFKALCADFEMTEQRYCVDYAKRGTAGCKKCKEKILKGMVRIGKV
VPNPFTESGGDMKEWYHVKCIFEKLEKARATTKKIEDLTDLEGWEELQDGEKEMINQHIS
ELTSKVVNTPKKKATVQAKLSPTGQITSPKKVPAVSSDPSPKKFSGFTAKPGNSEEAASS
SSQKFSLSAEKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLQKGTGGDGFHGD
LYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFICNQEVMTRDLEQGDVSETVRIFFELSK
SCPPASKSLLTIQEVDKFLTQLSKLSKEEEQQTLLQEIASKCTANDLKCIIRLIKHDLKM
NAGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNQQEAQKVPGLKKTLSVQATLMTPVQ
PMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKKGEQFSYFSRSLKPVLPHKVAHFK
DFIPKAFPGGHSMILDAEVLLIDTKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFND
VSLMDRPLRERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMINRVIREGLEGLVLKDV
KSTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPDGQK
WCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKNYYPDFIVPDPKKAPVW
EITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWTTATNLPQLKELYQLSKEKSDFTVVA
TEEDNSTAGSSGENEGLGRSSTPQKAVKQPSSKSPAKIKKPEASKPLGKSPLKKAEEKRG
EKRKAPEPGEDKGKQTLLDIFTGVKLYLPPSVEDFSKIRRYFIAYDGDLVQEFDTASATH
VMGDVDENLEAKHVSPDWIWACIRKRRLVAPC
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcttttttaaagtcttgctcttttgcacagccaggaccctaaagagaagtgag
aagtgggtctcactgcccgtacaggcctcccaaacctgctttggcatccaagagacattt
tacaactgcttgttgttgcggagaaatcactctttacttttgacgggccgaagataccaa
ccggtagcacaagattttgcttttccagcatctttgcacgtttgcactttcaaggccctg
tgtgcagacttcgagatgacagagcagaggtactgtgtggactatgccaagcgaggcacg
gcgggctgtaaaaagtgtaaagagaagatcctgaaggggatggtgcgcattgggaaggtg
gtgcccaacccattcacagagtctggtggggacatgaaggagtggtaccacgtcaagtgc
atctttgagaagctggagaaggctcgagctacaaccaagaagatcgaagaccttacagac
ttggaaggctgggaggagctgcaagatggagagaaggagatgataaaccagcacatctca
gagcttacttccaaagttgtgaatacaccgaagaaaaaggcaactgtccaggcaaagctt
tctcccactggacaaatcacctcccccaagaaggtgccggcagtttcctctgatccctca
ccaaagaaattctcaggctttacagctaagccaggcaattctgaggaagcggcatccagt
tcttctcagaagttcagcttgtctgcagagaagtgtgacccaaagcacaaggactgtttg
ttgcgagaattcaggaagctttgtgctatggttgcagagaagccaagctacaatgtgaaa
acccagatcatccaggactttctgcaaaagggaaccggaggagatggtttccatggagat
ctctatctgacggtgaagctgctgttgcctggggtaattaagagcgtatacaacttgaac
gacaagcagatcgtgaaactcttcagcaggatcttcatctgcaaccaagaagtcatgacc
cgtgacctggaacagggcgatgtttcggaaacggtgcggatcttttttgagctgagcaag
tcctgccctccggcttccaaaagccttctgacgatccaagaggtggacaagtttctaacc
cagctctccaagctttccaaagaggaggagcagcaaactttgctgcaggagattgcaagc
aagtgtacagccaatgacctgaagtgcatcatcaggttaatcaaacatgacttgaaaatg
aatgctggcgccaagcatgttctagatgccttggacccaaatgcttacgaggcattcaaa
gcatcacgcaacctccaagacgtggtggagagggtgctgaggaaccagcaggaggctcag
aaggtgccaggcttgaaaaaaaccctcagtgtgcaggccacactcatgacccctgttcag
cccatgctggctgaagcttgcaaatccattgagtatgctatgaagaagtgtcccaacggg
atgtactcggagatcaagtacgatggagagcgtgtccaggtgcacaagaagggagagcag
ttcagctatttcagccgcagcctgaaaccagtccttcctcacaaggtggcccacttcaag
gacttcattcccaaggcattcccagggggacacagcatgatcctggatgcagaggtcctg
ctgattgacaccaaaaccgggaagccactgccttttggcactctcggggtgcacaagaaa
gctgctttccaggatgccaacgtctgtctgtttgtctttgactgcatctacttcaacgat
gtcagcctgatggacaggcccctacgggagcgtcgtaagtttctacatgacaatatggtg
gaaatccccaaccggatcctcttctcagagatgaaacacgtcacgaaagcttcagacctg
gccgatatgatcaaccgcgtcatccgcgaggggctggagggattagtgctgaaggatgtg
aagagtacctacgagcctggaaaacgtcactggctaaaagtaaaaaaggattatctgaac
gagggagcgatggctgacacagcggatttggtggtcctgggtgccttctatgggcaaggc
agcaaaggtggcatgatgtccatttttctcatgggctgttacgatcctgacggccagaag
tggtgcacagtgaccaaatgtgctggcgggcatgacgatgccactcttgcccgtctgcag
aaggagctagacatggtgaagattagcaaggatcccagtaaaattccaagttggctgaag
attaataagaattattatcccgacttcatcgttcccgatccaaagaaagcgcctgtgtgg
gagattactggagcagaattctccaaagcagaggctcacactgctgacgggatctccatc
cgcttcccccgctgcacacgcatccgcgacgacaaagactggacaacggccaccaacctc
ccacaactcaaggagttgtatcagctgtccaaagagaagtcagacttcactgtggtcgcc
accgaggaagacaactccacagctggcagcagcggagagaacgaggggctgggcagatct
tccactcctcagaaggcagtcaagcagccctccagcaagtctcctgcaaaaatcaagaag
cctgaagctagcaaaccacttggcaaatcccctctgaagaaagcggaggaaaaacgagga
gagaagaggaaagcgcctgagccgggtgaagacaaaggaaagcagacgctgctggacata
ttcaccggggtgaagctgtaccttcctccttccgtggaggacttcagtaaaatcaggcgc
tatttcatagcctatgatggagacctggtccaggagtttgacacagcttcggccacgcat
gtgatgggggacgtggatgagaatctggaggccaagcacgtctctcctgactggatctgg
gcctgcattcggaaaaggaggcttgtggccccttgctga
DBGET
integrated database retrieval system
