Gekko japonicus (Schlegel's Japanese gecko): 107108120
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Entry
107108120 CDS
T04299
Symbol
DDX42
Name
(RefSeq) DEAD-box helicase 42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107108120 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gja03041
]
107108120 (DDX42)
Enzymes [BR:
gja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107108120 (DDX42)
Spliceosome [BR:
gja03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107108120 (DDX42)
Complex B
107108120 (DDX42)
Complex C
U2 SnRNP specific factors
107108120 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107108120
NCBI-ProteinID:
XP_015264004
LinkDB
All DBs
Position
Un
AA seq
923 aa
AA seq
DB search
MADAMNWNKGGPGTKRGFGFGGFSISAGKKEEPKLPQQSHSAFGATGSAAGFGKTPPPQL
PSFYKIGSKRANFDEENAYFEDEEEDSNNVDLPYIPAENSPTRQQFHSKTPDSDSEDDPL
EAFMAEVEDQAARDMKRLEDKDKERKNTKGIRDDIEEEDDQEAYFRYMAENPNAGVVPEE
EEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELR
HKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGI
AKTGSGKTAAFIWPMLVHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLR
SVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMG
FEYQVRSVASHVRPERQTLLFSATFRKKIERLARDILIDPIRVVQGDIGEANEDITQIVE
IFSSGPNKWNWLTSRLVEFTSSGSVLLFVTKKANADELANNLKQEGHSLGLLHGDMDQSE
RNKVISDFKKSAFPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKG
VAYTLLTHKDSNFAGDLVRNLEGANQNVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGG
GLGYRERPGLGSDGSDRGSNSIMSNYEAYKPSTGAMGDRLSAMKAAFQSQYKSHFVAASF
NNQKTGSSSAGASGWTSAGSLNSVPTNSAQQNLAKSDSPMSAAKGLSGFISAGSLNSIPP
FPSPGIQGFNSVNASNSTREGSGGGRERYSDNRGSGRHGDNQRHGDSSSRHSDSQRHGDS
YRHGENRHGDSHRHSESRHSGGGSSSRHGDSRNNGDSRNSSENRNSENRNSENRKDGNSR
DNSKTDGFAVPEPPKRKKSRWDS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgccatgaactggaacaaaggtggccctggtaccaaaaggggttttggtttc
ggtggcttctcaatatcagctggaaagaaggaagagccaaaactccctcaacagtctcat
agtgcttttggagccactggttctgcagctggattcgggaaaacaccaccacctcagctg
ccttctttttacaagattggatccaaacgggcaaactttgatgaggagaatgcgtatttt
gaggatgaagaggaagattctaataatgttgacttgccgtacattcctgccgagaactct
cccactcggcagcaatttcattccaaaacaccggactcggacagtgaggatgaccccttg
gaggcgttcatggctgaagtcgaggatcaggctgctagagacatgaagaggctggaagat
aaagacaaagaaaggaaaaatacaaagggtatacgcgatgatattgaagaggaagatgac
caagaggcttacttccgttacatggcagaaaaccccaatgctggtgtggtcccagaagaa
gaggaggacaacctggagtatgacagtgatggaaatccaattgctccctccaaaaaaatc
attgaccctcttcctccaattgaccattcagagatcgaatacccaccatttgagaagaac
ttctatgatgagcatgaggaaatcaccagcctcactccgcagcaagtggtggagcttcgc
cataagctgaacctccgggtctctggagctgctccaccaaggccgggaagcagttttgct
cattttggtttcgacgaacaacttatgcatcagatcaggaaatcggagtacactcagcct
acccctatccagtgccagggtgttccagtagcactgagtggcagagacatgattggcata
gcgaagactggcagtgggaagacagcggctttcatttggcccatgttggttcatatcatg
gatcagaaggagctggaaccaggagatggacccattgcagtgattgtgtgtccaaccaga
gagctgtgccagcagatccatgctgaatgcaagcgctttgggaaagcctacaacctgcgc
tccgtagcggtgtatggtggaggaagcatgtgggagcaagcaaaagctctgcaagaaggg
gcagaaatcgttgtctgtactccaggccggctgattgatcacgtgaagaagaaagctacc
aacctccagagggtcacttaccttgtgtttgatgaagctgacagaatgtttgacatgggt
tttgaataccaagtccgctcagtcgccagccacgtgcgtcccgaaaggcagactttgttg
ttcagtgcaacctttcggaagaagatcgagagactggccagagacattctgattgaccca
attcgtgtggtgcagggagacattggagaggcaaatgaagatatcactcaaattgtggag
atcttctcctctggccccaacaagtggaactggctgaccagccgcctcgtggaattcacc
tcttcagggagcgtcctcctctttgtcaccaagaaagcaaacgctgatgaactggccaat
aacctcaagcaagaagggcacagcctggggctgctgcacggcgacatggaccagagcgaa
aggaacaaggtcatctcggatttcaagaagagtgccttccctgttctggttgctaccgat
gtggcagctcgtggtctggatatcccttcaattaagaccgtgatcaactacgacgtggcc
cgcgacatcgacacccatacccaccgcattggtcgcacaggcagagcaggcgagaaaggg
gtggcctacaccttactgactcacaaggacagcaactttgctggggaccttgttcggaat
ttggaaggagccaatcagaatgtttcaaaggagctcttagacttagccatgcagaatgct
tggttccgaaaatcccgtttcaaaggagggaagggcaagaagctcaacattggtggcggt
ggcctggggtatcgtgaacgccccggcctaggttctgatggttctgatcgtgggagtaac
agcatcatgagcaattacgaagcgtacaaaccttcaacaggagcaatgggggacagactg
tctgcaatgaaggcagcatttcagtcacaatataagagtcactttgtggccgccagcttt
aacaaccagaagacgggcagctcttcagcaggtgccagtggctggaccagtgctggcagc
ttgaactccgtgccaacaaattcagcacagcagaacttggcaaaatccgacagccccatg
agcgcagcaaaggggctctcaggcttcataagcgccggaagcctaaacagcatccctccc
ttcccgagccccggaattcaaggattcaacagtgtgaatgccagtaacagcacccgagaa
ggtagtggtggaggccgagaacggtacagtgacaaccgaggcagcggtcgccatggcgac
aaccagcgccatggagacagcagcagtcgccacagcgacagccagcgccatggagacagc
tatcgccatggagagaaccgccatggggacagccatcgtcacagcgaaagccgacattct
ggcggtggaagcagcagccgccacggggacagccggaataatggggacagccggaacagc
agtgaaaacagaaatagtgagaacaggaacagcgagaacaggaaggatggcaacagcagg
gacaacagcaagacagatggttttgctgttcccgaacccccaaagcgcaagaagagtcga
tgggacagctaa
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integrated database retrieval system
