Gekko japonicus (Schlegel's Japanese gecko): 107109308
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Entry
107109308 CDS
T04299
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107109308 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gja03019
]
107109308 (PARN)
Enzymes [BR:
gja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107109308 (PARN)
Messenger RNA biogenesis [BR:
gja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107109308 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
Motif
Other DBs
NCBI-GeneID:
107109308
NCBI-ProteinID:
XP_015265391
LinkDB
All DBs
Position
Un
AA seq
634 aa
AA seq
DB search
MEVTRSNFKENLSKVYEAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMGFLLFQFGLCTFKYDLTEEKHIMKSFNFYIFPKPFNRTSPDIKFVCQSSSIDFLANQG
FDFNKVFHNGIPYLNREEQRQLQEQYDEKRSQANGAGALSYVSPNAAKHPVTIPEDQKEF
IENVVERIEDLLQKEESTSLELEPCTGFQRKLIYQMLSWKYPKGIHVETLETEKKERYIT
VSKVDEEERKRREQVKQAKEQEELNDAVGFSRVIHAMANSGKLVVGHNMLLDVMHTIHQF
CCPLPEELGEFKELTTCVFPRLLDTKLMASTPPFKXXXXNTSLAELEKRLKDKPFSPPKV
ESAEGFPRYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNPVPARSKLIEPFFN
KLFLMRVIDIPYLNLEGPDLEPKRDHVLYVTFPKEWKTSNLYQLFRAFGNIQVSWIDDTS
AFVSLRKPEQVQIAVNTSRYAESYRIQTYAEYIEKKHEEKRQGKRKWTEDGWKEAEAKRL
KPQDVPHLLQNRYCSFASFTATSTVGKRSMSPIQEESGCDEAEEAALDPSDSLEESTDES
RKKAKKLKRSKREPDPAGDVKSASSMVFEVPDMW
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaccaggagcaattttaaggagaacctcagcaaagtttatgaagctattgaa
gaggcagactttttggcaatcgatggagagttctcaggaatcagtgatggaccgtccgtc
agcgcactgaccaatggctttgacacccccgaagaaaggtatcagaagctgaaaaagcat
tccatgggtttcttgctgttccagtttggactctgcacttttaaatatgacctcacggaa
gagaagcacatcatgaaatcatttaacttctatatctttcccaaacctttcaacagaacc
tcgccagatatcaaatttgtctgtcagagctcaagcatagactttttagcaaaccaggga
tttgattttaataaagtttttcacaatggaatcccttatttaaatcgagaagagcagcgg
cagctgcaggagcagtacgatgagaagcgctctcaagccaacggggcgggggctttgtcc
tacgtgtcccccaacgccgccaagcatcctgtgactattccggaggaccagaaggagttc
attgagaatgtggtagaacggatagaagacctcttgcagaaggaagaaagtaccagcttg
gagctggagccgtgcacgggattccagagaaagctgatctatcagatgttgagctggaag
tatccaaaaggtatccacgttgaaacgctggaaacggagaagaaggaaaggtacatcacc
gtcagcaaagtggatgaagaggagcgcaagcggagagagcaggtcaagcaagccaaagag
caggaagagctgaacgatgccgtggggttttcccgagtcatccatgcgatggcgaattcc
ggcaagctcgtggtcggccacaacatgctgctcgacgtcatgcacaccatccaccagttc
tgctgccccctcccagaggaactcggtgaatttaaagaactaacgacgtgcgtctttcca
aggctcctggatacgaagctgatggcaagcacgccgcccttcaagnnnnnnnnnnnnaac
acctccctcgcagagttggaaaagcgcctaaaggataaacccttcagccctccaaaagtc
gagagcgcggaagggttcccccgctacgacacggcctccgagcagctccacgaagcgggt
tacgacgcctacatcaccggcctgtgcttcatctccatggccaacttcctaggttccttc
ctcagccctcccaagaatcccgtgcctgccagatcgaagctcatcgaaccctttttcaac
aagctgtttctcatgagggtgatcgacatcccgtacctcaatctggaaggaccagacttg
gagcccaaacgggaccacgtcctttacgtgacgttccccaaagagtggaagacgagcaac
ctgtaccagctgttccgtgcttttggtaacattcaggtgtcctggattgatgacacgtca
gcatttgtgtcgcttagaaaacctgagcaagtacaaatcgccgttaacaccagcagatac
gcagaaagctaccggatccagacctacgccgagtacattgagaagaagcacgaggagaag
aggcaagggaagaggaagtggaccgaggacggctggaaggaggcggaggccaagcgcctg
aagccgcaggacgtgccgcacctgctccagaaccgttactgcagtttcgccagttttaca
gctaccagcacggtgggaaagaggagcatgagtcctattcaagaagagagcggctgcgac
gaggcggaagaggcagcgctggatccctccgactccttagaggaatccacggacgagagc
aggaagaaggccaagaagttgaagagatccaaaagggagccagacccagcaggagacgtc
aagagtgcttcctccatggtcttcgaagtcccggacatgtggtag
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