Gekko japonicus (Schlegel's Japanese gecko): 107114560
Help
Entry
107114560 CDS
T04299
Symbol
COL11A1
Name
(RefSeq) collagen type XI alpha 1 chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107114560 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gja00536
]
107114560 (COL11A1)
Glycosaminoglycan binding proteins [BR:
gja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107114560 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
107114560
NCBI-ProteinID:
XP_015271584
UniProt:
A0ABM1KCZ7
LinkDB
All DBs
Position
Un
AA seq
1868 aa
AA seq
DB search
MEMRQRWSTRWKTKRWFWDSALPALLITLTLLLEAAEVRGAEPVDVLKALEFHNSPEGIS
KTAGFCINRRNSRGSDVAYRVSKNAQLSAPTKQLYPGGNFPEDFSVLFTVKPKKGIQSFL
LSVYNEQGIQQVGIEVGRSPVFLFEDQKGKPAPEDYPLFRTVNIADGKWHRVAISVEKKT
VTMIVDCRKKTTKPLDRSDRSIVDTNGITVFGTRILDEEVFEGDIQQLLIISDPRAAYDY
CEHYSPDCDSPVPNAPQAQEPHVDEYTTEDLMEYDYDYGDPDYKDYKEPDTVTEGPPLYD
ETVAQTEANIVDGYHEYNVAETDYGTSEGYQTATPSQTTGPNEQNPVEEVFTEEYLTGEE
YNSETKKNEEREYGSRGTIDHSESEVLVDGDLGEYDFYEYKDYEEKPTNPTNEEFGPGVP
AETDVTETSVNGHGAYGEKGQKGEPAVIEPGMLIEGPPGPPGPHGLMGPPGTQGPTGPAG
DPGDRGPPGRPGLPGADGLAGPPGTMLMLPFRFSGGGEKGPPISAQEAQAQAILQQARIA
MRGPPGPMGLTGRPGPVGGPGGSGAKGDSGDPGPQGPRGIQGPAGLPGKPGKRGRPGADG
ARGMPGEPGSKGDRGFDGLPGLPGDKGNRGDRGPQGSPGAPGEDGMRGEDGEVGPRGLPG
EAGQRGLLGPRGSPGPPGQPGIAGVDGPSGPKGNLGPQGEPGPPGQQGIPGPQGLPGPQG
PIGVPGEKGPQGKSGLAGLPGADGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKG
ADGVRGLKGGKGEKGEDGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRAGPTGDSG
GPGQAGEKFHLFRLSAIARKVGIAMQIAILVEIPWVDKLEALRETGNFIEMVITIESVMS
VTADKPDAYPFPIMGSTGFPGFPGSNGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTG
KPGPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG
KTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISG
KDGPPGLRGFPGERGLPGAQGAAGLKGGEGPQGPPGPVGSPGERGPAGTAGPIGLPGRPG
PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKG
SKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIG
LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPTGSVGSVGGVGEKGEPG
EAGNPGPPGEAGTSGPKGERGEKGEAGPPGAAGPAGIKGPPGDDGPKGNPGPVGFPGDPG
PPGEPGPAGTDGTGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKG
AKGEPGAEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGTPGQDGPPGPMGPPG
LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGTPGTKGDAGIPGPAGPFG
PPGPPGLPGPQGPKGSKGSTGPSGQKGDGGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSS
DAMLADAADTILDYTDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFP
DGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGTWFSEFKRG
KLLSYVDAEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHEASSDSYDKALRFLGSN
DEEMSYDNNPYIKALHDGCASRKGYAKTVVEINTPKIDQVPVVDVMINDFGDQNQKFGFE
VGPVCFLG
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atggagatgaggcagagatggtccaccaggtggaaaacgaaacggtggttctgggactcc
gcgttacccgcgctcctcatcacgttgacgctcctgctggaggctgcggaggtcagagga
gctgagccagttgacgtgctcaaagcattagagtttcacaattcaccagaaggaatatca
aaaacagccggattttgtataaacagaaggaattccagaggatcagatgttgcctacagg
gtttcaaaaaatgcacagctcagtgccccaacaaaacagttgtacccaggtggaaacttt
cctgaagatttttcagtactatttacagtaaagcctaaaaaaggaatccagtcctttctt
ttatctgtctacaatgaacaaggtattcagcaagttggcattgaggtaggcaggtcacct
gttttcctgtttgaggatcaaaagggaaagcctgctccagaagattatcccctcttcagg
acagttaacattgcagatggaaagtggcatcgggtagccattagtgtggagaagaagact
gttaccatgattgtggactgtaggaagaaaaccacaaaaccacttgacaggagtgacaga
agtattgttgacaccaatggcatcactgtctttggaacaaggattcttgatgaggaagtc
tttgagggtgatatccagcagctgttgattatcagtgatcccagagcagcctacgactat
tgtgagcattacagccccgactgtgattcccctgtgcccaatgctcctcaggctcaagag
cctcacgttgatgagtacacaactgaagatttaatggaatatgactatgactatggggat
ccagattataaagattataaagagcctgatactgtaacagaaggacccccactatacgac
gagacagtggcacaaacggaggccaacattgttgatggatatcatgaatataatgtggct
gaaactgactatgggacttcagagggctaccagactgcgactcctagtcagacgacagga
ccaaatgagcaaaatccagttgaagaagtatttactgaagaatacctaacgggagaggag
tataattcagagactaaaaaaaacgaggaaagagagtatggaagcagaggaacaatagac
cacagtgaatctgaagttctggtagatggagatttaggcgaatatgatttttatgaatat
aaagactatgaagagaagcctacaaatcccactaatgaggagtttgggcctggtgttcca
gcagagactgatgtcacagaaacgagtgtgaatggtcatggtgcttatggagaaaaagga
cagaagggcgagccagctgtgatagaacctgggatgctgattgaaggaccaccagggcct
ccaggacctcatggtcttatgggtcctcctggcacacaaggtcccacaggtcctgctggt
gaccctggtgataggggtccaccaggacgtcctggtcttccaggtgctgacggcttagca
ggacccccgggtaccatgttaatgttgccgttccgttttagtggaggtggtgagaagggc
ccaccaatctctgctcaagaggctcaagcacaagctattcttcaacaagccaggattgcc
atgagagggccacccggtcctatgggactcactggaagaccaggtcctgtgggtggtcct
ggaggctcaggtgccaaaggggatagtggagatccaggtcctcagggccctcgaggtata
caaggtccagctggtcttcctggaaaaccgggcaaacgaggtcgcccaggtgctgatgga
gctagggggatgccgggggaacctggttctaagggtgacagaggttttgatggccttcct
ggtttacctggtgataaaggtaacaggggagatcgtggaccgcaaggatctcctggtgct
cctggtgaagatggaatgagaggagaagatggagaggttggaccaagaggcctcccaggt
gaagctggtcaacgaggattactcggcccaagagggtcacctggccccccaggacaacct
ggaattgcaggtgttgatggtccatcgggtcccaaaggaaacttgggccctcaaggggaa
ccaggacctcctggccaacaagggattccaggtccacaaggacttccaggtccacaaggt
ccaattggagttcctggtgaaaaaggaccacagggcaagtcaggccttgctgggcttccc
ggtgcagatggccctcctggtcacccaggcaaagaaggccagtctggagacaaaggtgcc
ttggggcctccaggtcctcaaggtcctattggttatcctggtcctcgtggtgtaaagggt
gcagatggtgtccgtggtctaaagggtggaaaaggtgaaaagggtgaagatggctttcct
gggtttaaaggcgatatgggacttaagggtgatagaggtgaagttggtccccttggtcct
cgaggagaagatggtcctgagggtcccaaaggccgtgcaggtccaacaggagactcaggt
gggcctggtcaagctggggaaaagtttcatctcttcagactttctgctatagccagaaag
gttggcattgcaatgcagatagcaattctggtggaaatcccatgggtagataagctagag
gctttgagagaaacaggaaacttcatagagatggtgataacaatcgaatcagtaatgtca
gtgacagctgataaaccagatgcttaccccttcccaattatgggctccaccggtttccct
ggattcccaggttccaacggagagaaaggtgcaaggggcttgcatggcaaaccaggccca
cggggacaacgaggaccaacaggaccacgtgggtcaagaggccctagaggcccaactgga
aaacctggcccaaagggcacttcaggcaacgatggaccgcctggtccaccaggtgaaagg
ggaccacaagggcctcaggggccagttggcttccctggaccaaagggacctcctggtcct
cctgggaaggatggtttgcctggacatccaggacagcgaggtgaaactggattccaaggg
aaaactggcccaccaggccctggtggagttgttggacctcagggccccactggtgagact
ggcccaattggtgaaagaggtcaccctggtcctcccggccctccaggtgaacagggcctc
ccaggtgctgctgggaaagaaggtgctaagggggatccaggtcctcaaggtatctctgga
aaagatggaccaccaggacttcgtggtttcccaggagaaagaggattaccaggggctcag
ggtgcggctggcctgaaaggaggagaaggtccacaaggtccccctggtccagttggttcc
ccaggtgaacgtggcccagcaggaacagctggccccattggtttgccaggacgtcctggc
cctcaaggtccccctgggccagcaggagaaaagggagctccgggtgagaaaggccctcaa
ggcccagctggacgtgatggagtacagggtcccgtaggtcttcctggtcctgctggtcca
gctggatctcctggagaagatggcgacaagggtgaaattggtgagccaggtcagaaaggg
agcaaaggtgacaagggagaaaatggtcctcctggaccgccaggtcttcaaggtcctgtc
ggtgctcctggtatagctgggggtgatggagagcccggtccaagaggacagcaagggatg
tttgggcagaaaggggatgaaggtccacgaggcttcccaggtcctccaggacccattggg
ctccagggcctgcctggtccacctggtgaaaaaggtgaaaacggagatgttggaccaatg
ggcccacctggaccccctggcccaagaggccctcaagggccaaatggagctgatggtcct
caaggccctactggttcagttggctctgttggaggtgttggtgagaagggtgaacctgga
gaagctggtaaccctgggcctcctggagaagctggcaccagtggtccaaaaggagaaagg
ggtgaaaaaggtgaggctgggccaccaggagcagctggacctgctggtattaaaggacct
ccgggtgatgatggaccgaagggcaatccaggtcctgttggcttccctggtgaccctggt
ccccctggtgaacctgggcctgctggtactgatggtacaggaggagacaaaggtgaagat
ggtgacccaggccaacctggtcctccaggtccctcaggtgaagcaggccctcctggacct
cccggaaagagaggacctccaggagcagctggggcagaaggaaggcaaggagaaaaaggt
gcaaagggtgaacctggtgcagaaggtgctccaggaaaaacaggcccagttggacctcag
ggtcctgcagggaaaccgggcccagagggacttcggggtattcctggacctgtgggtgaa
caaggtctacctggaacacccggtcaagatggcccacccggtcctatgggtccacctggc
ttgcctggactaaaaggtgacccaggatccaaaggtgaaaagggacatcctggtttgatt
ggcctgattggacctccaggagaacagggggaaaagggtgacaggggtcttcccggcacc
cagggaacccctggaacaaaaggagatgcaggaattcctggccctgctggcccttttggt
cctcctgggccaccaggtttacctggtccgcagggtccaaaaggttctaaaggttcaacc
ggtcctagtggtcagaagggtgatggtggtttaccaggaccccctggacctcctggccct
ccaggtgaagtcattcaacctttgccaatccagtcacccaaaaagaccaggagatcttca
gatgccatgttagcagatgcagctgatactatcctcgattacactgatggcatggaagag
atctttggttcactgaactctctgaagcaggatattgagcatatgaaatacccaatgggg
actcaaaacaacccagcccgaacatgcaaggatctacagctttgtcacccagacttccca
gatggagaatattggattgatccaaaccagggttgttctggagactcgttcaaagtgtac
tgtaatttcacagcaggtggagaaacttgcatctatcctgataagaaatcagaaggagtg
agaatttcatcatggccaaaggaaaatccaggaacctggtttagtgaatttaagagaggc
aagctgctttcatacgtggatgctgaaggcaattccattaatatggtccaaatgacattc
cttaaactactgagtgcctccgcccgacagaacttcacttacaactgtcatcagtcagtg
gcctggcatgaagcttcttctgacagctacgacaaagcactaaggttcttaggctcaaac
gatgaagagatgtcttatgacaacaatccttacatcaaagccctacatgatggctgtgca
tcaagaaaaggctatgcaaagactgttgttgaaattaatactcccaaaattgaccaagtg
cctgttgttgatgtgatgattaatgactttggtgatcagaatcagaagtttgggtttgaa
gttggtccagtctgtttccttggttaa
DBGET
integrated database retrieval system
