Gekko japonicus (Schlegel's Japanese gecko): 107116560
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Entry
107116560 CDS
T04299
Symbol
SPG11
Name
(RefSeq) spastic paraplegia 11 (autosomal recessive)
KO
K19026
spatacsin
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gja03400
]
107116560 (SPG11)
DNA repair and recombination proteins [BR:
gja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
107116560 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
107116560
NCBI-ProteinID:
XP_015273982
UniProt:
A0ABM1KJU5
LinkDB
All DBs
Position
Un
AA seq
2417 aa
AA seq
DB search
MAGALPVLLLPLQAPPGPLARAKLSRRQEALAVASPAAQELRWTGPGWEGGGGSRRPALV
ALPGVCQDFVWENSEDNDPTVDKLKLLTVSQTRELSVYEVFPKVRNCEVTLVHSCSEDRL
MKLVEQKNISLAPVSSLRVLSFENSRAVLMLNNFIVVRLGFPGGGREAEDLEDCFFLDLS
PQVLERIVDVSFCRGVIILLDKSGWIYVFDAIDGTYLAYVDVALYQAEGPDEKNPAILLP
LTSLTVSHDLSVAVITNCSGHAAAVDLDFYFKEYPGHLLCKRNVDNLPVEQLKEMDEDDL
RSSEYSMTFVNQAFRTDRSWKAHLVSLYEKAQRVYSPNLVADVYLPWYQHHLRLEHRDCK
THDTPETTLVRDVADAFSNARRKDHKSAKERDRRWKSLHSGERGDCVKTECKSVTGFSAL
FTISSESEGLTLVLWDLETQDLVLSHVGKNSFFVECGQEEHLSLILSEEFLNRLIIHGSA
GTVDSLCCLNGWGRCSIPIHALEAGLENRQLDTVDFFLKNKENLFSLSSTCSSQDQTSST
TSDFYLKSVEELRPALDLLCLAIQENDLEAQSKHFSEQLLSLTLNFLNKQLCEVFVHMEE
LDENLDGCVNILTSYITKLRTFMIKFPHKHPSIPSTAWDLEEDVPGMQQRQTWEPCSTEE
IVADAILNKKLPEAQTFFRMTGNPAQKLERLTQIGLDLVYRSLRKGNAKEASKLLTNMGF
DVMKQLRRICFYTNEQPVRDFLVKVLQEENYFSEAEKETINFVYQVEDAYSGVSRENAKN
TQSRQWVKEKDPSDHTAAWDALMNCGKDRVHNEEHRVMLNWAQSWDQTTREIVLLPTRSP
EGFKSCHPEVLWMHLSSWHDWGSIRSWIADCQSPAGSSMKWPALPTEALDRGTLCSSYMR
NEILDSLARNGVFAPAELEDFQRLLQRLAHAGGVMQRPQPVSGFSSPGGLDFHACFVLYC
LDHGLNHLLYTYLDYYRLCPSNCPILGDRALHEAHPWFEFLVRCRDIASNPGDAEVIFQA
SLANAQILIPSDQASVSTMLLEGRTLLALAATMYAPGGIDQVLQNGSGGESPPRKVDTQL
VRMALAPYPKLKAALFSPLTSHGGTLSSDVSLYHLVQALAPFDPAKLFGWQPANSLAMPD
ASSTLPHFSCPSLINKYAVIEQLDFCYYLRHERPSFAFGTFLVQQLIKSKTPKQLVQQAG
HEAYALALSLFHVPSVAAACVCFLELLGLDSLKLRVDVKAANVILSFMSRREEPQYNSIR
ESLVEKLTELVKGVKTAAEELLVCLEEAVWDKVEHQNIKKTSSSARKQWSLVVQFCRLHN
LRLNTSYLKECARSNEWLQFIIEAQMYNYQPAEVLAILPDFSLPLQDHLRLAFESLWPLL
PRAGSQGSSPCILRHEQKPGSPTTSGLFHILLQCQDQPHPWRYLLGETLNHRAPVLSVLA
ACFQDASVLHCLCVWILTSLDGSTAGDVTDHIEGSVETHEWDLQDLATLWQALLRRQKVR
TLLSGFRLFLKDSPLLTALEVYEWCMDYRNYHEAQTKLLELQASLSKLQATDEELPPILP
APWLKSQVSFLLELMLQQCRTQYELRKLLQIFADTDTTLPGGPNMKKLSALCRILKDSSI
SISRTILSGYTPGNFSNECRRILEQLQERSLFSVARDVAELAELPLDPVVVQEMLQNLHL
LKQVGRWPQKQTRIEFWKKCHETFVRNSVSNQTAFDFFSAQAEAVSEPADSERMSGIQER
RLLLTLAGHWLASSDPVPLEELEETERKIWLCHIAQHALSRGSEPAKHRFSHPISMSGEL
SFEALAREFSFSKLPALSAPKCLRLESLPSQEDASRATLPNADVESLRVLIGGLLDEGSV
HEASRVCRYFSFYSRDVLLVLHCRALAAGEALGSGCHPEIQAILAAREEEEEEEGDGELQ
NRRLQPTSSLESWSFVGVPGSGDKVVGSLQALMAECLHGRNYCRQVLCLYELSKELACPF
SEISAQDAEKLLRAILSSQQPDRCKKAQAFITTQGLEPEAVAELVAEEVVRELLAPAQGE
GGQNSVLNPAEETQAFLQLAKLCQDCTLVGMKLLDKISSVPHGELGCTAELLILAHRCFS
LTCHMEGITRVLQAARLLTDEHLAPSGKYGLMVRLLTGIGRYNEMTYIFDLLHEKHYFEV
LMRKKLDPTGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAANVQLKLIE
SQPWEESLQDIPNLKKRLMRALTLFLDAAESYSKDSCVRQSLRCNRLTKLITLQLHFLHT
GHSARLISLRQQDLLECIVNLPRFYQASIVADAYDYVPDWSEVLYQQVIVKGDFSYLEEY
KQRGLLKASTFEDVARKLKQHPSSSAAPLKNLKRLLTYCEDIYVYYKLAYDHELYDVVTM
LLQDPQTGSCLNDLLAN
NT seq
7254 nt
NT seq
+upstream
nt +downstream
nt
atggccggggcgctgcccgtcctcctgctgcctctccaggcgccgccggggcccctcgcc
cgggccaagctcagccgtcgccaggaggccctggcggtcgcctcccccgccgcccaggag
ctgcgctggaccgggcctgggtgggagggaggcggcgggagccgccggcccgccctcgtc
gccctgcccggcgtctgccaagactttgtgtgggagaattctgaagacaatgatccaaca
gtggacaaactgaaactactgactgtaagccagaccagggaactgtctgtatatgaagtt
tttcccaaggttcggaactgtgaagtgacgctcgtgcacagctgcagtgaagacaggcta
atgaagctggttgaacaaaaaaacatcagtttagcgccggtctcctcgttgagagtgctc
tcctttgaaaacagcagagctgtcctgatgctcaacaactttattgtcgtgcgtcttggt
tttccgggaggaggacgggaggccgaagacctggaagactgttttttccttgacctgtca
ccacaagttttggaaaggatcgtggatgtttccttttgcagaggcgttatcatcttgtta
gacaagtctgggtggatatatgtctttgatgcaatagatggaacgtatctggcctatgtt
gatgttgccctctatcaagcagaggggccagacgagaagaacccggccatcctgttaccc
ctgacgtcgctaacggtctcgcatgatctcagtgttgctgtgatcaccaactgctctggc
cacgctgcggctgttgacctcgatttctatttcaaagaatatcctggacatttactgtgt
aagagaaacgttgacaatctccctgtagagcaactgaaggagatggatgaggatgacctt
agaagctcagagtacagtatgacatttgtgaaccaggcatttcggacagacaggtcctgg
aaggcacacctagtttcattatatgaaaaagctcaaagggtttattctccgaatttggta
gctgatgtttacctgccttggtatcagcaccatctgcgtctagagcaccgtgactgtaag
acccacgacacacctgagaccacccttgtccgagacgtcgctgacgccttttccaacgca
agaaggaaagatcataaaagcgcaaaggaacgagataggcggtggaagagcctgcattca
ggagagcgaggagactgcgtgaaaaccgagtgcaaatctgtgacaggtttcagtgcctta
ttcaccatctcaagtgagagcgaaggattgactctggttctgtgggatttggagactcaa
gatcttgtgctctctcatgtgggcaaaaattccttctttgtagaatgtggccaagaggag
cacttaagtctcattctttcagaagaattcttaaatagactgataatccatggaagcgct
ggcaccgtggattctctttgctgtctcaacggatggggaaggtgttctattcccatacac
gccttagaggccggcttggagaaccgtcagctggacactgtggatttctttttgaagaac
aaggagaatcttttcagcctctcttcaacttgttcctcgcaagaccaaacgtcaagtacc
acgtcagatttttacttgaagagcgttgaagaactgcggccggccttggacttgctgtgt
ttggcaatccaggaaaacgacctggaagctcagagcaaacacttctccgagcagctcctg
agcctcactttgaatttccttaacaaacagctctgtgaggtttttgtccacatggaagaa
ctggacgaaaacctggatggatgtgtgaacattttaaccagctacatcactaaacttcgg
acattcatgataaagttcccacataagcatcccagcatcccaagcacagcctgggatctc
gaggaagacgtgcccggaatgcagcaacgccagacgtgggagccgtgcagtacagaggaa
attgtcgccgatgctattttgaacaagaagctgccggaagcacagacctttttccggatg
accgggaatcctgctcagaagctagagaggctgacgcaaatagggctggacctggtgtac
agaagccttcggaagggcaatgccaaagaagcctccaagctcttgacaaacatgggattc
gacgtgatgaagcagctgcgtagaatatgtttctacaccaatgaacagcccgtccgtgac
ttcttggtgaaagtgctgcaggaggaaaattacttttctgaggccgaaaaggaaaccatc
aactttgtgtaccaggtggaggatgcctactcaggggtttctcgggagaatgcgaagaac
actcagtccaggcaatgggtgaaggaaaaggatccgtctgaccacacggctgcttgggat
gccctgatgaattgtggaaaggaccgagttcataacgaagagcacagagtcatgttaaac
tgggctcagtcatgggatcaaaccacccgagagatcgttcttctccccacacgatcccct
gaaggatttaagtcatgtcatccggaggttctttggatgcatttgtcctcctggcacgac
tggggcagcattcgttcgtggattgcagactgtcagtccccggcgggtagcagcatgaag
tggccagcgctgcccacagaggcccttgacagaggtaccctgtgcagcagttacatgaga
aacgaaatactggacagcctggcgagaaacggggtttttgcaccggcagaactggaagat
ttccagcgccttcttcaaagactggctcacgctggaggagtgatgcagcgtccgcagccc
gtctctgggttctcgtccccggggggcttagatttccacgcctgcttcgtcctttactgt
ttagaccacgggctgaaccatctactctacacctatttagactattatcgcttatgtcct
tcaaactgccccattttgggcgaccgggcgcttcacgaagctcacccttggtttgaattc
cttgtgcggtgtcgagacattgccagcaaccccggagatgcagaggtgatttttcaggct
agtctggcaaatgcccagatcttgattcccagtgaccaggccagcgtgagcaccatgctt
ctggaaggacggacgcttctggcccttgcggccacaatgtatgctccgggaggtatcgac
caggttcttcagaacgggagtggaggagagagcccccccaggaaggtggacacccagctg
gtcaggatggcccttgctccgtaccccaagctcaaggccgccctcttctctccgctgacc
tcccacgggggcaccttgtcttccgacgtctctctgtaccatcttgtccaggcattagct
ccatttgatcctgctaaattgtttggctggcagccggcaaattcgctcgccatgcctgat
gccagcagcactcttcctcacttctcctgccccagcctcatcaacaaatacgctgtgatc
gaacagctggacttctgctactacttgcgacacgagcgcccctcgttcgcttttgggacc
ttcttagtccagcagctcataaagagcaaaaccccaaagcagctggtccagcaggccggc
cacgaagcctatgctttggccctgtctctcttccatgtcccttccgtggctgctgcctgt
gtctgttttctggaattgctgggcctcgatagccttaagctccgggtggacgtcaaagcg
gccaacgtgatcttgagcttcatgtctcgaagagaggagccgcagtacaactccatccgg
gagtccttggttgaaaagctgacagagctagtgaagggagtcaaaacagccgcagaagag
ctcctggtttgcttggaggaagccgtttgggataaggtcgagcatcagaacatcaagaag
acgtccagcagcgccaggaagcagtggtccttggtggtccagttctgcaggctccacaac
ctcaggctgaacacctcctacctgaaggagtgcgccaggtcgaacgagtggctgcagttt
attatcgaggcccagatgtacaactaccagccagctgaggtcctggccatcctccccgac
ttctccctccctctgcaggaccatttgaggctggcctttgagagcctgtggcccctcctc
cctcgggcggggagccagggtagcagcccctgcatactgaggcacgagcagaagccgggc
agccccacgacgagcggtctcttccacattctgcttcagtgccaggaccagccccaccct
tggcgttacctcctgggcgaaaccctgaatcaccgcgctcctgtcctgagcgtgctcgcg
gcctgcttccaggacgccagcgttctccactgcctctgtgtttggatcctgacttctctg
gatggctccacggcgggtgacgtgaccgaccacatcgaaggctccgttgaaacccacgag
tgggaccttcaggacttggccaccctctggcaggcccttttaaggaggcagaaagttaga
acccttctgagtggtttccggctctttctgaaggactctcccttgctgaccgctctcgag
gtgtacgaatggtgcatggactacagaaattaccacgaagctcagaccaaactccttgag
ctccaagcaagtctttcaaaactccaggccaccgatgaagagttgcctcccattctgccc
gcgccgtggttgaagtcgcaggtctcgtttcttctcgagctgatgttgcagcagtgcagg
acgcaatatgagctacgaaaactccttcagatttttgccgatacagacactactcttcct
ggtgggccaaatatgaagaagctgagcgcactctgccggatcctgaaggactcgtctatc
tccatcagccgtaccattctcagcggttacacgcctgggaatttctcgaatgagtgcagg
agaattctggagcagcttcaggagaggagcttgttctctgtggcgcgggacgtggcagaa
ctggctgagctgccgctggaccctgttgttgtccaagagatgctccagaatctgcatctc
ttgaagcaggttggccgctggcctcagaagcagacgaggattgaattttggaagaagtgc
catgagacctttgtgaggaattccgtttcgaatcagacagcctttgatttcttctccgct
caggccgaagcggtgtctgagcccgcggacagcgagagaatgtccggtattcaggagagg
cggcttctgctcacgttggctggccactggctggccagcagtgatcccgttccacttgag
gaactggaggagacagagagaaaaatctggctctgtcacatcgcacagcatgccctgagc
cggggttccgagccagccaagcatcgattctctcacccgatttccatgagtggtgaactt
tcctttgaagctttggccagagagttctctttttccaagctgcctgccctgagcgccccc
aagtgcctgcgcctcgagagcctgccttcccaggaagacgcctcacgggccacccttccc
aacgctgacgtggaatcgctgagggttttgattgggggccttctcgacgaggggagcgtg
cacgaagccagccgggtgtgccggtacttcagcttctacagtcgagacgtgctgctggtc
ttgcactgcagagcactggcagcgggggaagccttgggcagtggctgtcaccccgagatt
caagccatccttgcagcgagagaagaggaggaggaggaggaaggggacggggagcttcag
aacaggcgactgcagcccacctcgagcctggagtcctggtcctttgtgggggtccccggt
tctggcgataaggtcgtaggcagcctgcaggccctgatggccgagtgcctgcacgggcgg
aactactgccggcaggtcctctgcctctacgaactgtccaaggagctcgcctgccccttc
agcgagatctccgcccaggacgctgagaagctgctgcgggccatcctgtcgtctcagcag
ccagacaggtgcaaaaaggcgcaggcgttcatcaccacccagggcctggagccggaggcc
gtggcggagctggtggccgaggaggtcgtgcgggagctgctggcccccgcacaaggggaa
ggagggcaaaactcagtgctgaatccggccgaggagacccaggcgttcttgcagctggcc
aaactatgccaggactgtactctggtgggcatgaagcttctggataagatttcttctgtg
ccccacggggagctcggctgcactgcagagctgctgatccttgcccaccgctgcttcagc
ttgacctgccacatggaagggatcactcgtgtccttcaagccgcccggctgctcacagac
gaacatttggcacccagtgggaagtatggcctcatggttcgcctcctgactggaataggc
agatacaatgagatgacctacatcttcgacctgctgcacgaaaaacattattttgaggtg
ctgatgaggaagaaattggatccgaccgggaccctcaagacggccttgctggactacatc
aagcgctgtcgcccgggggacagcgagaagcacaacatgattgcgctctgcttcagcatg
tgccgggagatcggggagaaccacgaggcggcagccaatgtgcagctgaagctcattgag
tcccagccgtgggaggagagcctccaggacattcccaacctgaagaagcgtctgatgagg
gccctgaccctcttcctagatgccgccgagagctactccaaggactcctgcgtgcgccag
tccctgcgctgcaacaggctgaccaagctcatcacgctgcagctccacttcctccacacc
ggccacagcgccaggctgatcagcctccgccagcaggacctgctcgagtgtatcgtgaac
ctgcccaggttctaccaggcttcgatcgtggccgatgcctacgactacgttccggactgg
tcggaggtcctgtaccagcaagtgattgtcaagggtgacttcagctacctggaggagtac
aagcagcgaggcctgctcaaggcgagcacctttgaggacgttgctcggaagctgaagcag
caccccagcagcagcgcggctcctctgaagaacctgaagcggctgctgacttactgcgag
gacatctatgtatactacaagctggcttacgatcacgagctgtatgacgtggtgacgatg
ctgctgcaggacccccagacgggctcctgcttgaacgaccttttggcaaactag
DBGET
integrated database retrieval system
