Gekko japonicus (Schlegel's Japanese gecko): 107117515
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Entry
107117515 CDS
T04299
Symbol
SMG7
Name
(RefSeq) SMG7, nonsense mediated mRNA decay factor
KO
K14409
protein SMG7
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107117515 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gja03019
]
107117515 (SMG7)
Messenger RNA biogenesis [BR:
gja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107117515 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
107117515 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
107117515
NCBI-ProteinID:
XP_015275138
LinkDB
All DBs
Position
Un
AA seq
1195 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTQWGVSDFIKAFIKFHGHVYLSKNLEKLNPLREKLEEQFKRLLFQKTFNSQQLVHITII
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNDYQEESWGSYP
LPALKVSMDWLKLRPSVFQESVVDERQYIWPWLISLLNSFQPHEEDLSCPNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQHRRLRQQRLIFTGKWIADNQPRLIQCENEV
GKLLFLTEIPELLLDEPSEAKQSLVLQEASLTEPQFADGSPGLKSVLSTGRNLSSSCDTG
DKPMVTFKENIKPREVNREPGRGYLTKEVSRERRDYSKGITANKNDGKKDNNNKRKNETK
KCGMEKMQEAGKQNVAVQVKSQTELRKTPVSEARKTPVTQSPNQASNSQFIPIHHPGAFP
PLPSRPGFPPPAYVIPPPVAFSMSSGYTFPGGVSVPGTFLQPAAHSPAGNQVQAGKPSHI
PYSQQRPSGPGPMNQGPQQTASPSQQSLSSLSAQATVQSASQLQVQALAQQQQQQQQSPT
KAVQALGKSPPHHSGFQQYSQADASKQLWNPPQVQGPLGKIMPVKQPYYLQSQDPLKLFE
QSLQPPLMQQQQPLEKKMKPFPMEPYNQNPSEVKVPEFYWDSYMADNRVVMAQQQANMDR
RGKRQQGVFRPEQDAMPRMGFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALL
GPLASLPGRSLFKSLLEKPSDLMSQSPSFLSLTGFSLNQERYPNSMFNEVYGKNLNASTK
PDVTPSVAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNS
VPFSNFGPIGTPDNRDRRVADRWKTDKPAMGGFGLDYLPATSSSSESSWHPSSTPSGTWA
AHGPAIEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgctttgcgcccagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcgaagctgggtccagctgaagtctggacttccaggcaagctttgcaggacttatac
cagaaaatgctagttacagatttggaatatgctttggacaaaaaagtagaacaagatctg
tggaatcatgcctttaagaatcagatcacaactctacagggtcaagcaaaaaaccgagca
aatccaaatcggagtgaagtccaggcaaacctctctctgttcctggaggcagctagtggc
ttctatacacagctactgcaggagctgtgcacagtgtttaatgtagatttgccctgtcgt
gtgaagtcctctcaactggggattatcagcaataaacagacgcacaccagcgccattgtg
aagccacaatctagctcctgctcatatatttgccagcactgccttgtccatcttggagac
attgctcgttacagaaatcagaccagtcaggctgagtcctactataggcatgcagctcag
cttgttccctccaatggtcagccttataatcagttggctattttggcatcctccaaagga
gaccacctgaccacaattttctactactgcagaagcattgctgtgaagtttcctttccca
gctgcctctaccaatctacaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aagactcaatggggagtgtctgatttcatcaaggcatttataaaattccatggtcatgtg
tacctgagtaagaacttggagaaattgaaccctcttcgtgagaagttagaggagcagttc
aagcggctgctgttccaaaaaaccttcaattctcagcagctagtccacattaccatcatc
aacctgtttcagctgcatcacttgcgagacttcagcaatgagactgagcagcacagttac
agccaagatgagcagctctgttggacgcaactgctggctctcttcatgtctttccttgga
atcctgtgcaagtgtccactccagaacgattaccaggaagagtcttggggttcttatccc
cttcctgctctcaaagtctcaatggactggctgaaacttagacccagtgtgtttcaggag
tctgtagtcgacgagcgccaatatatttggccatggctgatctcccttctaaacagtttc
caacctcatgaggaagacctctcctgcccaaatgcaactccacttccagaggagtttgag
ctgcagggattcctcgctctgagaccttccttcaggaacttagatttctccaaaggccat
caagggattactggagacaaagaagggcagcatcggcgtctacggcaacagcgcctgatc
ttcacgggcaagtggattgctgacaaccagccaaggctgatccagtgtgaaaatgaggtc
gggaaactcctgttcttgaccgagatcccagagttactacttgatgagcctagcgaagcc
aaacagagtcttgttctgcaggaagcatcccttacagagccacagtttgcagacgggagt
ccaggactaaagtcagtgctgtcgacaggtcgaaacctaagcagcagctgcgacacagga
gataagccaatggtgacattcaaagagaacattaaaccgcgagaggtaaaccgagagcca
ggccgaggctatctaacaaaggaagtgagtagagaaagaagggattacagcaaaggaata
acagccaataaaaatgacgggaagaaagacaacaacaacaagaggaagaatgaaaccaag
aagtgcggcatggaaaagatgcaggaagcagggaagcagaacgtggcggtgcaggtgaaa
tcacagacggagttgaggaagactcccgtctctgaagccaggaaaacaccagtaactcag
tctccaaaccaggccagcaactcccagttcatccccatccatcacccaggagctttcccc
ccgcttcccagccgaccaggcttcccacctccagcgtatgttatccccccgcctgtggct
ttctctatgagctcggggtacactttcccaggtggcgtttctgtcccaggaacctttctt
cagcctgcagctcactcacccgcaggaaaccaggtgcaagctgggaagccatcccacatt
ccttacagccagcagcggccctccggaccaggcccgatgaaccagggacctcagcagacg
gcctccccttcccagcagtccctctcatccttatcagctcaggcaacagtgcagtctgcc
agccagttacaggtccaggctctggcccagcagcagcagcagcagcagcagtctcctaca
aaagctgtgcaggccttagggaagagccctccgcaccactctggattccagcagtattcc
caggcagacgcatccaagcagctctggaaccctcctcaggtccaaggcccgctggggaag
attatgcctgtgaagcagccctactatcttcagagtcaggaccccctaaaactgtttgaa
cagtcgttgcagcctcccctcatgcaacagcagcagcctctggagaagaagatgaagcct
ttccccatggagccatataatcagaatccctcggaagtcaaggtgccagaattttactgg
gactcttacatggctgacaaccgtgttgtgatggcacagcagcaagctaacatggaccgc
aggggcaaacggcagcaaggagtttttcgtccggagcaggatgccatgcctaggatgggt
tttgaggaccccaagagctcccctctgcttcctccggacctgttaaagagtctggctgcc
ttggaggaggaggaagagctgattttctctaatcctcctgatctttacccagctctgctg
gggcctctcgcgtctcttcctggacgaagcctctttaaatcgctgctagagaaaccatca
gatctgatgtctcagtcaccttctttcctgtccctcacgggcttctctcttaaccaggaa
agatacccaaacagcatgttcaacgaggtgtatggaaaaaacctcaatgccagcacaaaa
ccagacgtcactccatcagtggctcaccaggagacttcactctactctctctttgaaggg
acgccatggtctccatctcttccagccagctcagatcattcaacaccagctagccagtcg
cctcactcatcgaaccctagcagtttgccaagctctcctccaacacacaaccacaactct
gttccattctccaactttgggcccattggaacgccggacaacagagatcggagggtggca
gatcggtggaagacggataagccagcaatgggaggatttggcctggactatcttccggca
acatcttcctcttcagagagtagctggcacccatccagcactcccagtggcacctgggca
gcccatggcccagcaatagaggattcgtcggccgtgctcatggaaagcctgaagtccatc
tggtccagttccatgatgcatcctggaccttcggccctggagcagctgctgatgcagcag
aagcaaaagcagcaacgcgggcaaggtgccatgaacccgccacactga
DBGET
integrated database retrieval system
