Gekko japonicus (Schlegel's Japanese gecko): 107117675
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Entry
107117675 CDS
T04299
Symbol
TARBP1
Name
(RefSeq) TAR (HIV-1) RNA binding protein 1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gja03016
]
107117675 (TARBP1)
03036 Chromosome and associated proteins [BR:
gja03036
]
107117675 (TARBP1)
Enzymes [BR:
gja01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
107117675 (TARBP1)
Transfer RNA biogenesis [BR:
gja03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
107117675 (TARBP1)
Chromosome and associated proteins [BR:
gja03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107117675 (TARBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
107117675
NCBI-ProteinID:
XP_015275322
LinkDB
All DBs
Position
Un
AA seq
1597 aa
AA seq
DB search
MELMLADTLLSRCPDSVALLGAVCGGGPGEALSVERTETLRFLLQRVAGGGWRGEDEARR
LAWEAALGRCFPVLLGSGSAAAEGRLRRVRAACGALRCCASLCGPSLAERLAREALESLA
AGPAGRLPTEAAVELLAAVAPWLVEPTLLERTVGGALTLLQQEEDEDKTLLVAGRLLPAL
GRNSAALGRVWEGLVFPPESAPQPVSRTLLVLSALSEAVFPAGAQQPGSGTDGEAPQLLD
ARLSSGFWRVVQRGLAESDALCRKRARYLLKRAVDVSEKLHAECVCSRDPGNEPWLFWWS
AEKKDQLTEFWGNYILIMETLEGNQIHVIKPVLPKLNSLYELAISEQKDSWVFHPSWHMC
IYKRMFESENKTLAKEGVIHFLEMWQTRCLPPSPGFSEFVIGPLMDALSESSFYSRSSGQ
VIGMCPLLGIKLQKFLAAFFTNIPEEEKSSFLLKFIQRMSNRHWCAIPVLFLSMALAHIP
ACRALDMEGLLALRDVLQCTMITHQILLRGAAQCYLLKAAMLLTNVEKVSLSDISNFIVS
LRPEESLGRGTVLWKMLCDWLHANDKHFQRPLNYGVPRDKTFLNVYVQFLVQDYLKTPVA
SGKSFISEDCLMPDWFEARLVATMILLAADVEEMTREYNGTGSTERMELKALLNPLLDVL
LKLGTNPYISTLKTDKSLQLLLKLLQICSVKCSNPQSDGVITFLQNEFMTASESILDFLL
RRLSANELNTISDLERCNLYLAVLSELLSFCSVSGWTKEMSFCGFISSLISASLCNLQEM
SSEKELKLGEQIQKVVCMASLSAVCEIIDQKPALQLQSLPAVETLKTVIVCSELNHVLKK
PCSIEKNSSLEELSSHQGWGKIVARYIRDQWVCLHFTLNNDQNPSKDEDLQQFSFDVQKH
TRCLQSALEALTILPSDHVLPVFHCMKILVPKLLESSESLCIEAFDLAWKIISSLNTQLI
FWPNLKGFVEFVFNPEVLAAAAKKKSKAYMKIKEIMFQIIEMSSTKNGVFNTLLSYCCQT
WMFPTCEHASAVENAFLNAGNYSELLVEACLFGTVFRRDQRLNQEVCAFVENLGSECAAN
VVIESTNRDDHYVRICAIKFLCLLDETNTLHKKFIEDFFMTLLDKGELMSKSKTRYYVNS
LQHRIKNRMWQTLLVLLPKLHEDFLTRTVDRILQAGYCSNQASVKYLIEWTIIWILHKFP
HFLQKFWDCFSYDEDSLKTSICTFLSVLSHLDTILQNISEKIPVLKKALVVVLQWCFHHN
FSVRLYAFVALKKIWGTCKELHMDDFETLTPVIESSLHQAESMHGTGNAKKNWQRIQKHF
FFENFHPLKDYCLETIFYTLPHLSELAEEEWISLNKFIAFTDIPLSATFPCICSHTELLN
LKPSDWSQQDRGLKSAEPDNQREWTDVQKKIIPWKNSTLDLDLELVFQDRAAKLGKSNSR
LIVVASLIDKPTNLGGLCRTCEIFGVSALIVGSLHYINDKQFQYLSVSAEQWLSLLEVKP
FQLIDYLDQKKTEGYTIIGVEQTAKSCNLTEYCFPEKSLLLLGNEHEGIPANLIQQLDVC
VEIPQQGVIRSLNVHVSGALLIWEYTRQQIIRQKIQR
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atggagctgatgttggcggacacgctgctctcgcggtgccccgactcagttgccctgctc
ggggcggtctgcgggggcggcccaggcgaggcgctctcggtggagcgaacggagacgctg
cgcttccttctccagcgggtggcgggaggcgggtggcgtggggaggacgaagcgaggcga
ctggcctgggaggcggcgctgggtcgctgcttcccagtgctgctcggaagcggctcggcg
gcggcggaggggcggctgcgccgggtgagggctgcctgcggggcgctgcgctgttgcgcc
tcgctctgcgggccctccctggcggagcggctggcccgggaggcgctggagtcgttggcc
gccggcccggctggacgactgccgaccgaggccgcggtcgagctcctggctgcagtggcc
ccgtggctggtggagccgacgctgctggagcgaaccgtaggaggcgccctgacgctcttg
cagcaggaggaggacgaggacaaaacgttgctggtggcggggaggctgctgcccgctctg
gggcgaaacagcgccgccctgggtcgcgtgtgggaaggtctggtgttcccccccgagagt
gccccgcagccggtgagccggaccctgctggtgttgagcgccctctccgaagccgtgttt
cccgcgggcgcgcagcagccagggagcggcactgacggcgaggctccccagctgctggat
gcgcggctctcgagcggcttctggagagtggtgcagaggggactggcggagagcgatgcc
ttgtgcaggaagagagcccggtacttgctgaagagagcggtggatgtgtcggagaagctg
catgctgaatgcgtgtgcagccgtgaccctggaaatgaaccatggttgttctggtggtct
gctgagaaaaaggatcaacttactgagttttggggaaactatattttaattatggagact
ctggaaggaaatcagatacatgttataaagccagttttaccgaagttaaatagcttatat
gaacttgcaatatcagaacaaaaagacagttgggtctttcacccatcatggcacatgtgc
atttacaaaagaatgtttgagagtgaaaataaaacattggctaaggaaggagttattcat
tttcttgaaatgtggcaaacacgatgccttcctccatcaccaggattttcagagtttgtt
attggaccattaatggatgctctttcagaaagttctttttattccaggtcatcaggccag
gtgatagggatgtgtcctttgttgggaataaagctgcagaagtttttggctgccttcttc
acaaatatcccagaggaagaaaaaagtagctttttgttaaagtttatacagaggatgagc
aataggcactggtgtgccattccagttttgtttctatccatggctctggcacatattcca
gcatgtagagcactagatatggaaggactcctagctctgagagatgtgctacaatgtacc
atgatcacacatcagattttgctacgaggagctgctcagtgctaccttcttaaagcagca
atgctcttgaccaatgtagagaaagtttcactttcagacatttcaaacttcatagtatct
ctgagaccagaagagtccttaggcagaggaactgttttgtggaaaatgctttgtgactgg
ctgcatgcaaatgacaagcactttcaaaggcctttaaactatggtgtgcctcgagacaaa
acattcttaaatgtttatgtgcagtttcttgtacaggactatctgaaaacacctgtagcc
agtggtaagtcatttatatcagaggattgccttatgcctgattggtttgaagctagactt
gttgctacaatgattcttctggctgcagatgtagaagagatgacaagagaatacaatggc
actggcagtacagaacggatggagctgaaggccctcctaaatcctctactggatgtcttg
ctgaaacttggcactaatccttacatttctacactgaaaactgataaaagcctccagcta
ttgttgaagttactgcagatatgttcagtcaaatgttccaatccacaaagtgatggagta
ataacatttctccagaatgaatttatgactgcttcagaaagcattttggattttcttcta
agaagactttcagcaaatgaattaaatacaatttcagatctggagcgctgtaatttatat
cttgcagtgttgtcagagctattgagcttctgctcagtcagtggctggacaaaggaaatg
tctttctgtggtttcatctcctctctgatcagtgcctccctctgcaatttacaagagatg
agcagtgaaaaggaactaaaacttggggaacagattcagaaggtggtgtgcatggcatca
ctaagtgcggtttgtgaaattattgatcagaagccagctcttcagcttcagtctctgcca
gcagttgaaactttgaaaacagttattgtctgttcagagcttaaccatgtattaaagaag
ccttgcagtatagaaaaaaatagttcccttgaggagctatcatctcatcaagggtggggg
aaaatcgtagcacgctacatacgtgatcagtgggtttgtcttcattttactctcaacaat
gatcaaaacccttctaaagatgaagatctgcaacagttttcatttgatgttcagaagcat
acaaggtgtctacagtctgccctggaagcactaacaattcttccttctgaccatgtttta
cctgtgtttcattgcatgaaaatacttgttcccaagcttctggagtcttctgaatctctg
tgcatagaggcttttgatttggcatggaaaattatatcttctcttaacacacagctaata
ttttggcctaatttaaaaggttttgtagagtttgtatttaatcctgaagttcttgctgct
gctgcaaagaaaaagagcaaagcatacatgaaaataaaagagatcatgtttcagattatt
gaaatgtcctctacaaagaatggagtttttaatacacttttaagttattgctgtcaaact
tggatgtttcctacttgtgaacatgcgagtgctgtagaaaatgctttcttgaatgctggc
aattacagcgaacttcttgtagaggcctgtttgtttggaactgtttttaggcgtgatcaa
agactcaatcaggaggtgtgtgcttttgtggaaaatcttggcagtgaatgtgcagcaaat
gttgttatagaaagtacaaacagagatgaccattatgtgagaatatgtgccatcaaattc
ctttgcttgctagatgaaacaaatacattgcacaagaagtttatagaagattttttcatg
actctgcttgataaaggtgaactgatgtccaaatcaaaaactcgctattatgtgaattcc
ttgcagcacagaattaaaaatcgaatgtggcagacattgctagtccttttacccaaactt
catgaggattttttgacaaggactgttgataggattcttcaggctggctattgcagcaat
caagcatctgtaaagtatttaatagagtggaccatcatctggattctacacaaatttcct
cattttctccaaaaattttgggattgctttagttatgatgaagactcacttaaaactagc
atttgtacatttttatcagtgttatcacacttggacacaattcttcagaatatttctgag
aagataccagttttgaagaaagccttagttgttgttctgcagtggtgtttccatcacaat
tttagtgttcgactttatgctttcgttgctcttaaaaaaatctggggaacgtgcaaagag
ttgcatatggatgattttgaaactttaactccagtcattgaaagtagtctccatcaagca
gaaagcatgcatggaacagggaatgctaaaaagaattggcagcgcatccaaaaacacttc
ttttttgaaaacttccatccacttaaggattactgtcttgagacaatattttatacccta
ccacatctttcagaacttgctgaagaagaatggatatctctcaataagtttatagcattc
acagacattcctttgagtgcaacgtttccatgcatctgttctcacactgagctccttaat
ctgaagcccagtgactggtctcaacaagatcgaggtttgaaatcagctgagccagataat
caaagggaatggacagatgttcaaaaaaagatcatcccttggaagaacagtactcttgat
cttgatctagagcttgtatttcaagatcgggctgctaaacttggtaaatcaaacagtaga
ctgattgtagtggcttcgctcattgataaacccaccaacctgggaggcttgtgtcgtaca
tgtgaaatatttggggtgtcagctctaattgtgggcagccttcattacataaatgacaaa
cagtttcaatatctcagtgtatctgcggaacagtggctttcccttcttgaggtaaagcca
tttcagcttattgattatttggatcagaagaaaactgaaggttacaccattataggtgtg
gaacaaacagctaaaagttgtaatctaacagagtattgctttccagagaaatccctgctg
ttgctaggaaatgagcacgagggaattcctgcaaatctgattcagcagctggatgtttgt
gtagaaattccgcagcaaggagttattcggtcacttaatgtccatgtaagtggagctttg
ctgatttgggaatacacaaggcaacagatcatcaggcaaaaaatacagagataa
DBGET
integrated database retrieval system
