Gekko japonicus (Schlegel's Japanese gecko): 107119902
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Entry
107119902 CDS
T04299
Symbol
DDX39B
Name
(RefSeq) DExD-box helicase 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03013
Nucleocytoplasmic transport
gja03015
mRNA surveillance pathway
gja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107119902 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
107119902 (DDX39B)
03015 mRNA surveillance pathway
107119902 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gja03019
]
107119902 (DDX39B)
03041 Spliceosome [BR:
gja03041
]
107119902 (DDX39B)
Enzymes [BR:
gja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107119902 (DDX39B)
Messenger RNA biogenesis [BR:
gja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107119902 (DDX39B)
Spliceosome [BR:
gja03041
]
Complex C
Other components
EJC/TREX
107119902 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107119902 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107119902
NCBI-ProteinID:
XP_015278011
LinkDB
All DBs
Position
Un
AA seq
422 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGDGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQLLPLLVQ
LNGPVRLPHSSLFACPAQVSVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN
LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTLHEKQVMMFSATLSKEIRPVCRKFMQDP
MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQL
LVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE
DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDISSYIEQ
TR
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaatgacgttgacaacgagctcttggattacgaggacgatgaggttgaaaat
caggcagcgggagacggggtggacgtcccgtccaagaaggacgtcaagggctcctatgtc
tccatccacagttctgggtttcgcgattttttgctgaagccagagctgctgcgtgccatt
gttgactgtggctttgagcacccctcagaagtacaacacgagtgcatcccgcaggccatc
ctgggcatggacgtcctctgccaggccaagtcgggcatgggcaagaccgccgtctttgtt
ctcgctacactacagcagctggagccggtcacgggacagctgcttccccttcttgttcag
ctgaatggtcctgttcggctgcctcattcttccctttttgcttgccccgcccaggtgtct
gtgttctttggaggcctgtccatcaagaaggacgaggaggtgctgaagaagaactgcccc
cacattgtggtggggaccccgggccgcatcctggccttggcccgcaacaagagcctcaac
ctcaagcacatcaagcatttcatcctggacgaatgcgacaagatgctcgaacagctcgat
atgcgccgggatgtccaggagatcttccgcatgaccctgcacgaaaagcaggtcatgatg
ttcagtgccactctcagcaaggaaatccgccccgtgtgccgcaaattcatgcaagacccc
atggagatcttcgtggacgacgagaccaagctgacgctgcacgggctgcagcagtactat
gtcaaattgaaagacaacgagaagaaccgcaagctctttgacctgctcgatgtgctggaa
ttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgcatagcattggctcagctt
ctggtggagcagaacttcccggccattgccatacacagggggatgccccaggaggagagg
ttgtcacgttaccaacagttcaaggatttccagcgccgtatcttggtggccaccaatctc
tttggccgtggcatggacattgagcgagtcaacattgccttcaactacgacatgccggag
gattcggatacctacctgcaccgggtggctcgtgccgggcgcttcggcacaaagggcctg
gccatcacttttgtgtcggatgagaacgatgccaagatcctgaacgaagtgcaggaccgc
tttgaggtgaacatcagtgagctgcccgatgagatcgacatctcttcttacattgaacag
acccgataa
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