Gekko japonicus (Schlegel's Japanese gecko): 107120509
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Entry
107120509 CDS
T04299
Symbol
SKIV2L2
Name
(RefSeq) Ski2 like RNA helicase 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107120509 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gja03019
]
107120509 (SKIV2L2)
03041 Spliceosome [BR:
gja03041
]
107120509 (SKIV2L2)
03009 Ribosome biogenesis [BR:
gja03009
]
107120509 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
gja03016
]
107120509 (SKIV2L2)
Enzymes [BR:
gja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107120509 (SKIV2L2)
Messenger RNA biogenesis [BR:
gja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107120509 (SKIV2L2)
Spliceosome [BR:
gja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107120509 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
107120509 (SKIV2L2)
Ribosome biogenesis [BR:
gja03009
]
Eukaryotic type
Pre-60S particles
Helicases
107120509 (SKIV2L2)
Transfer RNA biogenesis [BR:
gja03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107120509 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
107120509
NCBI-ProteinID:
XP_015278709
LinkDB
All DBs
Position
Un
AA seq
1038 aa
AA seq
DB search
MADAFGDELFSVFEEDSSAAASSDSKKTKGAVAASAAAGKAGKQPDGQSPSSIKIPTKTK
RDAETDNTDITVLGKKPKLEDTTDDLSLADLMPKIKVQAVETVEGCTHEVALPADDDFIA
LKPRTGKAAKEYPFILDAFQRESILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR
VIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMR
EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC
HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGR
KGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEVF
NNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATET
FAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMS
PTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEK
VNKLEQQYNEIEIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKN
EDDYFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPNEKG
EMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPSLDPIDDMG
IKDLGLKKVIQKIEAFEHRMYSHPLHNDPNLETVYKLCERKAQIAVDIKAAKRELKKART
VLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQ
ATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRP
NLMDVVHTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA
EGITKIKRDIVFAASLYL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggcgacgagcttttcagcgtgttcgaggaagattcttccgccgcc
gcctcgtctgactcgaagaaaacaaagggagctgtcgcggcctccgctgctgcagggaaa
gctgggaaacaaccagatggccaatctccatcatccattaaaatccccacaaaaacaaaa
agagatgcagaaacagataatacagatattacagttttggggaagaagcccaagttggag
gatactacagatgatctcagtttggctgacctgatgccaaaaataaaggtgcaagctgtt
gaaactgttgagggttgtacacatgaggttgctcttcctgcagatgatgacttcatagct
ctaaaaccaagaactggaaaagccgccaaggaatatccatttatcctggatgctttccaa
agagaatctattctgtgcgtggataataatcagtcggttttagtgtctgctcatacatca
gccgggaagacggtttgtgcagagtatgcaattgccttggctttgagggaaaaacagcgt
gtgatatttaccagtcctattaaagctctgagtaaccagaagtaccgtgaaatgtatgaa
gaatttcaggacgttggcttgatgactggggatgtcaccatcaaccctacagcatcctgt
cttgtaatgacaactgagattttaagaagcatgctttacagaggctccgaagtcatgcgg
gaagttgcttgggttatatttgatgaaatccactatatgagagactcagagcgtggtgtg
gtatgggaagaaaccattattttgctcccagacaacgttcactatgtgtttctttctgca
actattccaaatgctcgccagtttgctgaatggatatgccatcttcacaaacagccttgt
catgtgatttacacagattatcgacctactcctctgcagcattacattttcccagcaggg
ggagatggacttcaccttgtggttgatgaaaacggtgattttagagaagataattttaat
acggctatgcaggtacttcgagatgcgggtgacttagctaaaggggaccagaaaggcaga
aaaggaggaacaaaaggtccctcaaatgtgtttaagattgtaaagatgatcatggagaga
aacttccaacctgtaatcatattcagtttcagtaagaaagactgtgaagcgtatgctctt
cagatgacaaaactagacttcaacacagatgaagaaaaaaggatggttgaagaagtattt
aataatgcaattgactgtttgtctgatgaagacaaaaaacttcctcaagttgaacatgtg
cttccacttctgaagcgaggcattggaatccatcatggtggtttgctccctattttaaag
gaaactatagaaatccttttctccgaaggactgataaaggccttatttgcaacagagaca
tttgctatgggaattaacatgccggcacggacggtgctgttcacaagtgcccggaaattt
gatgggaaggattttcgatggatctcctcaggtgaatacattcagatgtctggtcgagct
ggacgtcgaggcatggatgacaggggaatagtcattcttatggtggatgagaaaatgagc
ccaacagtaggaaaacagcttctaaagggatctgctgaccctctaaatagtgcattccat
ttgacatacaacatggtactgaatttgctgcgtgttgaagaaattaaccctgaatatatg
ttagagaaatcattttatcagttccagcattacagagctattccaggagtggttgaaaag
gtaaataagttagagcagcagtacaatgagattgaaattccaaacgaggaaagtgtggtc
atctactataaaatcagacagcaacttgctaagctggggaaggaaattgaagagtacatt
cacaagccaaagtactgcttgccgtttttacagccaggcaggctggtaaaagtgaaaaat
gaagatgattattttggctggggcgtggtggtcaacttctccaagaaatccaacgtgaag
cctaattctggtgagctggacccactttacgttgtagaagtcctcctacactgtagcaaa
gaaagcttgaaaaattctgctactgaggctgccaagccagcgaagcccaatgagaaaggg
gagatgcaggttgttcctgttctggtgcatcttctgtctgcaatcagcagcgttcgactt
tatatccccaaagacctgaggcctcttgacaacaggcagagcgtattgaagtcaattcag
gaagtacagaaacgctttcctgatggagttccatcgctggatcccatcgatgacatgggc
atcaaagatctgggtctgaaaaaagtaatccagaagatagaagcctttgagcatcgtatg
tattctcatccgcttcacaacgatcctaatttggaaaccgtctacaaactttgtgaaaga
aaagcacagattgctgtggatattaaagcagcaaagcgggaactgaagaaagccaggact
gttctacagatggatgaactcaagtgtcgtaaacgggttctgcgaaggttgggctttgca
acctcttcagatgtcattgagatgaaaggacgagttgcttgtgaaatcagcagtgcagat
gagctgctactgacagaaatgatgttcaatgggcttttcaacgacttatctgctgaacag
gctactgctttgctaagctgctttgtattccaagaaaattccagtgaaatgcccaaacta
acggaacaactcgccggtcccctccgccaaatgcaggaatgtgcaaaaagaattgctaaa
gtgtcagcagaagctaaactggaaattgatgaagaaaattacctcaattccttcaggccg
aacttgatggacgtggtacatacctgggctaacggagctacttttgctcacatatgcaaa
atgacagatgtctttgaagggagtataattcgctgtatgaggcggctagaagaattgctt
cgacagatgtgccaagcagcaaaagccattggaaacacagaactggaaaataaatttgca
gaaggtattactaaaatcaagagagacattgtgtttgctgcaagtctttacctataa
DBGET
integrated database retrieval system
