Gekko japonicus (Schlegel's Japanese gecko): 107120677
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Entry
107120677 CDS
T04299
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja04510
Focal adhesion
gja04512
ECM-receptor interaction
gja04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107120677
04518 Integrin signaling
107120677
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107120677
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gja00536
]
107120677
Glycosaminoglycan binding proteins [BR:
gja00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107120677
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
107120677
NCBI-ProteinID:
XP_015278931
UniProt:
A0ABM1KYZ4
LinkDB
All DBs
Position
Un
AA seq
1478 aa
AA seq
DB search
MASPKTPPYTFREMERKSDEAGSCVQDGQRYSDKDVWKPEPCQICVCDTGTILCDDILCE
ELRDCPNPEIPFGECCPICPTDQPATSGRQPGPKGQKGEPGDIKDVVGPRGPPGPQGPSG
EQGPRGERGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDE
KAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGSPGEPGEPGASGPMGPRGPSGPPG
KPGDDGESGKPGKPGDRGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGSKGEAGAAGAKG
EAGASGESGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGTPGFPG
APGAKGEAGPTGARGPEGAQGSRGESGSPGSPGPSGAPGNPGTDGIPGAKGSAGAPGIAG
APGFPGPRGPPGPQGATGPLGPKGQSGEPGIAGFKGEQGPKGEPGPAGPQGGPGPAGEEG
KRGARGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPPGLGGPKGAGGDPG
RPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKG
ANGEGGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQGLPG
PPGPPGEGGKPGDQGVPGEAGAAGLVGPRGERGFPGERGSPGAQGLQGSRGLPGTPGTDG
PKGATGPPGAVGSQGPPGLQGMPGERGAAGIVGPKGDRGDVGEKGPEGAPGKDGGRGLTG
PIGPPGPSGPNGEKGESGPPGPSGAAGARGAPGDRGEPGAPGPAGFAGPPGADGQPGAKG
EQGESGQKGDAGTPGPQGPSGAPGPQGPTGVTGPKGARGAQGPSGATGFPGAAGRVGPPG
PNGNPGPPGPPGSAGKDGPKGARGDAGPTGRAGDPGLQGPAGSPGEKGESGEDGPPGADG
PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDRGPPGPVGPPGLTG
PSGEPGREGNPGSDGPPGRDGSPGVKGDRGETGPLGSPGAPGPPGSPGPVGPTGKQGDRG
EAGAQGPLGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGTSG
DQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETGSAGPPGNPGPPG
PPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRSDQASGNLRQHDAEVDATLKSLNNQIESI
RSPEGSKKNPARTCRDLKLCHPEWKRGDYWIDPNQGCTLDAIKVFCNMETGESCVYPKPS
SIPKKNWWTSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQMTFLRLLSTEGSQNL
TYHCKNSIAYMDEASGNLKKALLIQGSNDVEIRPEGNSRFTYSALQDGCTKHTGKWGKTI
IEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccccaaaacgcccccttatacttttagggagatggagaggaaatctgacgag
gcaggcagctgtgtacaggatgggcagaggtatagtgataaagatgtgtggaaacctgag
ccctgccagatctgtgtttgtgacacggggactatcctctgcgacgacatactctgcgaa
gaactgagagactgtcccaacccagagatacccttcggagaatgttgtcccatctgccca
actgaccagcccgccaccagtggtcggcaacctggccccaagggacaaaaaggggaaccc
ggcgatataaaagatgttgtaggaccgagaggtccccctggaccacagggaccttcaggt
gaacaaggaccaaggggagaacgcggagacaaaggggaaaagggtgctcctggcccacgt
ggtagagatggcgaacctggtacacctggcaaccctggccctcccggacccccaggccct
ccgggtccccctggccttggtggaaactttgctgctcagatggcaggaggatttgacgag
aaagctggtggtgctcagatgggagtcatgcaaggacctatgggacctatgggaccacga
ggccctccgggacccacaggatctcctggccctcaaggatttcaaggcagccctggtgaa
cctggtgaacctggcgctagtggtccaatgggtccccgcgggccatccgggccacctgga
aaacctggtgatgatggtgaatcaggcaaacctggcaaaccaggagaccgtggaccacct
gggccgcagggtgctcgaggtttccctgggaccccaggtctccccggagtgaaaggacac
agaggttaccctgggttggatggctccaagggagaagctggtgctgcaggtgctaagggt
gaagctggggcttcgggcgagagtggttctcctggtcccatgggtcctcgtggtcttccg
ggagagagaggacgtcctggtccatccggtgctgctggtgctcgtggtaacgatggtctc
cctggcccagctggtccacccggacccgttggccctgcgggaactccaggtttccctggc
gcaccaggtgcaaagggtgaagctggccccactggtgctcgtggccccgagggcgctcaa
ggatcccgaggtgaatctggaagccccggctcacctgggccttcaggagctccaggcaac
cccggaactgacggaatccctggtgccaaaggatctgcgggtgctcctggcattgcaggc
gctcctggttttcctggcccacgtggacctcctggacctcaaggtgcaactgggcctttg
ggtcccaaaggccagtcgggagaacccggcattgcaggcttcaaaggtgaacagggtccc
aagggcgaacccggccctgcaggcccacaaggcggtcctggaccagcgggagaagaaggc
aagcgaggggctcgtggtgagccaggagctgccggaccccttgggccacctggagagagg
ggctcccctggaaatcgtggtttcccaggtcaagatggattagctggtcccaagggtgct
cctggggaacgtggtcctcctggccttgggggccccaaaggagccggcggagatcctgga
cgtccaggagagcccggcctccctggtgctcggggtctcactggtcgacctggagatgct
ggtcctcaaggcaaagtcggcccgtctggcgccccaggagaagatggacgacctggccct
cctggtccacaaggtgcccgtggtcagcccggcgtgatgggtttcccgggccctaaaggt
gctaacggtgaaggtggaaaagctggtgagaaggggcttcctggtgctcccggtctacga
ggtcttcctggtaaagatggcgaaacaggagctgctgggccacctggaccttcaggtcca
gcaggtgagagaggcgagcagggtgccccaggaccttctggattccagggacttccaggg
cccccaggccctccaggtgaaggtggaaaaccaggtgaccagggtgttcccggagaggct
ggagctgcaggcctggttggccccagaggtgaacgtggcttcccaggtgaacgcggatct
ccaggtgcccaaggcttgcagggttctcgcggactgcccggcactcctggtactgatgga
cccaagggtgcaaccggtcctcctggtgccgttggatctcaaggacccccaggtctgcag
ggaatgcccggtgagagaggagcagccggtattgttggaccaaagggagacaggggtgat
gttggtgagaaaggtccagaaggcgcacctggcaaggacggtggcagaggtttgacaggt
cccattggtcctcctggtccttctggtcccaatggtgagaagggtgaatccggccctcct
ggcccatccggtgctgcaggtgcccgtggtgcccctggcgaccgtggtgaaccaggtgct
cctggccctgctgggtttgctggcccacctggtgccgatggccaacctggtgctaaaggt
gaacaaggtgaatctggacagaagggtgatgctgggaccccaggcccacaaggaccatct
ggtgctcctggcccacagggtccaactggtgtgactggtccaaaaggagcacgtggcgcg
cagggcccctcgggtgccactggattccctggagcagcaggacgagttggaccaccagga
cccaatggcaatcctggtcccccaggcccaccaggctctgctggtaaagacggtcccaag
ggtgctcgtggtgatgcaggcccaacggggcgtgccggtgaccctggtctgcaaggccct
gctggttccccaggcgagaagggagaatctggagaagatggtccccctggtgctgatggt
cccccgggtcctcaaggtttggcggggcagagaggtattgttggtctccccggtcagcgt
ggcgagagaggattccctggtctgcctggtccttctggtgagcctggcaaacaaggtgct
tctgggggtcccggggatcgaggcccacctggcccagtgggtccacctggtctgactggt
ccctctggcgaacctggacgggagggtaaccctggttcagatggtcccccaggccgagat
ggttctcctggagtgaagggtgatcgtggtgagacgggtcctcttggttctcccggtgct
cctggccctcccggctctccaggtcccgttggtccaactggcaagcaaggagacagaggc
gaagcaggtgctcaaggcccattgggtccttccggtcccgcgggggcacgcggcatgcct
ggtccacaaggtcctcgtggggacaagggcgaagctggcgaggcaggagagcgaggcctg
aagggccaccgaggattcaccggcctgcagggcctacctgggcctccgggtacttctgga
gatcaaggtgctgctggtcctgctggcccttctggtcccaggggtcccccaggtccagtt
ggcccctctggcaaagatggttctaatggaatgcctggccccattggtcctcctggtcct
cgtggtcgcagtggagaaactggttctgctggtcctcctggaaaccctggacctccaggc
cctcccggcccacctggacccggtattgacatgtcggccttcgctggcctgggtcagact
gagaaaggccccgaccctctgcgctacatgcggtctgaccaggcttccggcaacctgcgg
cagcacgacgccgaggtcgacgctaccttgaagtcactcaacaaccagatcgaaagcatc
cggagccccgagggctctaagaagaacccggcccggacttgccgtgacttgaaactctgc
cacccagaatggaagaggggtgactactggattgaccccaaccagggctgcaccttggat
gccataaaagttttctgcaatatggagaccggcgagtcgtgtgtctaccccaagcctagc
agcatccccaagaagaactggtggacaagcaagagcaaggagaagaagcacatctggttt
ggagagaccatcaatggtggtttccattttagctacggagacgacaacctggctcccaac
actgccaacatccagatgaccttcctgcgcctcttgtctactgaaggctcgcagaacctc
acctaccactgcaagaacagcatcgcctacatggatgaggcttctgggaatcttaagaaa
gctctcctgattcaggggtccaacgatgtggaaatcagacctgaaggaaacagccggttc
acatatagtgccttgcaggatggatgcacgaaacacactggcaaatgggggaagacgatc
atcgaatacagatctcagaagacctcgcgcctgcccattgtcgacatcgcacccatggac
attggtggagccgatcaggagtttggtgttgacattggccccgtgtgctttttgtaa
DBGET
integrated database retrieval system
