Gekko japonicus (Schlegel's Japanese gecko): 107120881
Help
Entry
107120881 CDS
T04299
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA processing factor 40 homolog B
KO
K12821
pre-mRNA-processing factor 40
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107120881 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gja03041
]
107120881 (PRPF40B)
Spliceosome [BR:
gja03041
]
Complex A
U1 snRNP components
U1 related factors
107120881 (PRPF40B)
Complex B
107120881 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
DUF4936
WHD_2nd_SelB
Motif
Other DBs
NCBI-GeneID:
107120881
NCBI-ProteinID:
XP_015279130
UniProt:
A0ABM1KZJ3
LinkDB
All DBs
Position
Un
AA seq
786 aa
AA seq
DB search
MSAPDPGSGPPPGQPASYPPAPPPLPILPPPFMPPPGIPPPFPPMGLPPMGPRPPPMPPM
PPGMMPPPPMIPPMPGPPPMGQISTMVPPMLPGMMMPGVPAGPVSVSGAAAPVTDPSSAS
VTQVAPVKPAWSEHRAPDGRIYYYNSETKQSSWEKPDELKSKAELLLSRCPWREYRSETG
KPYYYNSQSKESRWTRPRELDDIEALIKEEEEDLERQQLHETPLSGPASPSPSSAATSDT
EGTGGVEGQETSGIEGVPPAVEEEAIISCGPGRRDEEDQGISNTWSSKEEAKYAFKELLK
DKGVPASASWEQAMKLISNDPRFSALPKLSEKKQAFNAYKAQRDKEEKEEARLRAKEAKE
ELQRFLEQHSKMSSTTRYRKAEQMFGELEVWAMVPERDRKEIYDDVLFFLAKKEKEHSKQ
LRKRNIQALKSILDSMSRVSFQTTWSEAQQYLMDNPSFAEDEDLQNMDKEDALICFEEHI
RTLEREEEEERERGRLRERRQQRKNREAFQAFLDELHESGRLHSMSTWMELYPSLSTDRR
FANMLGQPGSTPLDLFKFYVEDLKARFHDEKKIIKDILKDRSFSVEINTTFEDFAHVISF
DKRAATLDAGNIKLTFNSLLEKAEAREREREKEETRKLRRKEAAFKSMLRQAAPPLEPNT
TWDEARERFVNNIAFEQVTLESERIRLFREFLQVLETECQHFHAKAKKHAKKPKKHHHKR
SASGSESGSDHPHRAAKRKKRNHSESAGSGASSSPDSEHSARHSKRQKKKSKKKRHKSVS
RGSGQT
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctccagacccaggcagtggccctcctcctgggcagccagcctcataccctccg
gccccaccaccacttccaattcttcctcctccctttatgcctcctcctgggattccacca
ccgttccccccaatggggctgcccccaatgggtccacgcccgccacccatgccacccatg
cccccaggcatgatgccacctccaccaatgatcccacccatgcctggacctccacccatg
ggacagatttccacaatggtgccacctatgcttcctggaatgatgatgcctggggtgcca
gctggccctgtttctgtctctggagcggcagctcctgtgaccgacccatccagtgcctct
gtgacccaggtggcccctgtgaagcctgcctggagtgagcatagagcccccgatgggcgc
atttactactacaattctgaaaccaaacaatcaagttgggaaaagccagatgaactcaag
tccaaggcagagctcttgctttcacgctgcccctggcgggagtaccgctcagagacgggg
aagccctattactacaactctcagagcaaggagtcgcgttggacccggccccgtgagctt
gatgatatcgaagcgctgatcaaggaggaggaagaggatttggaaaggcagcagctgcat
gagacccctttgtcaggtcctgccagtccaagcccatcttctgctgccacgtcagacacg
gaagggaccggtggcgttgaaggacaggagacctcaggcatcgagggggttcctcctgca
gttgaggaggaagctataatcagttgtggtcctggacggagagacgaggaagatcaaggc
atcagcaacacctggagcagcaaggaagaagccaaatatgcttttaaggagctgctcaaa
gacaagggtgtcccagcaagcgcatcgtgggagcaggccatgaaactcattagtaatgat
ccacggttcagtgccttgccgaagctgagtgagaagaagcaggcattcaacgcctacaag
gcccagcgggacaaggaggagaaagaggaggcccgtctccgggcgaaggaggccaaagag
gagctgcagcgcttcttggaacagcacagcaaaatgagctccaccacccgctacaggaaa
gcagagcagatgtttggggagctggaagtctgggccatggtgccagagcgtgaccgcaag
gagatctatgatgatgttctctttttcttggcaaagaaggagaaggagcattccaagcag
ctgcgcaagaggaatatccaggctctgaagagcatcctggacagcatgagccgcgtcagc
ttccagaccacctggtccgaggcccagcagtacctgatggacaaccccagctttgccgag
gatgaggacctgcaaaacatggacaaggaggatgccttgatctgctttgaggaacacatc
cggaccctggaaagggaggaggaggaagagcgggagcgtggccgcctgcgagagagacgc
cagcagcgcaagaacagggaggcctttcaggccttcttggacgagcttcatgaaagtggg
cgcctgcactccatgtccacctggatggagctgtacccctcgctcagcactgacagacgc
tttgccaacatgttgggtcagcctggttccactcctctagacctgtttaaattctatgtg
gaagacctcaaggcacgcttccacgatgaaaagaagatcatcaaggatattctcaaggac
cggagcttcagtgtggaaataaacacgacctttgaagattttgcccatgtcatcagcttc
gacaagcgggccgctaccctcgatgcaggcaacattaagctgactttcaacagtctgctg
gagaaggccgaagcgcgagagcgggagcgggagaaggaagaaacccgcaagttgcggcgc
aaggaggcagcattcaagagcatgttgcggcaggctgctccccctctggaacccaacacc
acctgggatgaggcgcgagagcggtttgtcaataacatagcctttgaacaagtcacacta
gaatcggagcgaatccgtctctttcgtgagttcctgcaagtgctggagacggagtgtcaa
cactttcacgccaaggctaagaagcatgcaaagaagcccaagaaacaccatcacaaacgc
tcagcttcgggctcagagtcgggctcagaccatccccaccgtgcagccaagcggaagaag
cggaaccattctgaatcagctggctcaggagcatcttcctcacccgattcagagcacagc
gccaggcactccaaaaggcaaaagaagaaaagcaagaaaaagaggcataaatcggtgagt
cgcgggagtggacagacttag
DBGET
integrated database retrieval system
