Gekko japonicus (Schlegel's Japanese gecko): 107124178
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Entry
107124178 CDS
T04299
Symbol
RTCB
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gja03016
]
107124178 (RTCB)
Enzymes [BR:
gja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107124178 (RTCB)
Transfer RNA biogenesis [BR:
gja03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107124178 (RTCB)
Prokaryotic type
tRNA splicing ligases
107124178 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
107124178
NCBI-ProteinID:
XP_015283050
UniProt:
A0ABM1LAR3
LinkDB
All DBs
Position
Un
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNSCRGGGVG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDECDVQPVKEQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagttataacgatgagctgcaatatctggataaactcgacaagaactgctgg
cgcatcaagaagggcttcgtgcccaacatgcacgtggaaggtgtgttctatgtgaacgat
cctctagagaagttaatgtttgaagagttaaggaattcctgtcgagggggaggtgttggc
ggtttcctgccagccatgaagcaaattggaaatgtggctgcactgcctggcattatccat
agatccatagggcttcctgatgtccattctggctatggctttgccattggtaacatggct
gcctttgatatgaatgacccagaagcagtggtatcaccaggtggtgttggctttgacatc
aactgtggtgtacggctgctgcgtactaaccttgatgagtgtgatgtccagcctgtgaag
gagcagctggcccagtccatgtttgaccacattcctgttggtgtgggatccaagggtgtc
attcctatgaatgccaaggatttggaggaggctctggagatgggagtggactggtccttg
cgtgagggttatgcctgggctgaggataaagagcactgtgaagaatatgggaggatgctg
caagctgatccaaataaagtatctgcaagggctaagaaaaggggcttgcctcagctggga
actctgggagcaggaaaccattatgctgagattcaggttgtggatgagatttataacgag
tatgctgcccggaagatgggcatagaccacaagggacaagtgtgtgtgatgatccacagt
ggcagcagaggcctgggccaccaagtagctacagatgccctcgtggctatggaaaaagct
atgaaacgggacaagatcattgtgaatgaccgccagctggcttgtgccaggattgcttcc
caagagggacaggattacttgaagggaatggcagcagctggaaattatgcatgggtcaat
cgctcttccatgactttcctcacgaggcaggcttttgccaaagtcttcaataccacccct
gatgatctggatatgcacgtgatctatgacgtgtctcacaacatcgctaaagtagagcag
cacgtggtggatgggaaagaacggaccctgttggtgcacaggaaaggatcgactcgggct
tttcctccacatcatcccctcatagctgtcgattaccaattgactggccagccagtgctg
attggtgggactatgggaacgtgtagctatgtccttactggtacagatcaaggcatgact
gaaacttttggaaccacttgccatggcgcgggccgcgcgctgtctcgagccaaatcccga
cgcaacttggattttcaggatgtcttggacaagctggcagacatggggattgcaatccgt
gttgcttctcccaaactggtcatggaagaagcacctgaatcttacaagaatgtgacagat
gtggtcaacacctgccatgcagctggcatcagcaagaaagccattaaactgaggcccatt
gcagttatcaaaggctaa
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