Gekko japonicus (Schlegel's Japanese gecko): 107124712
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Entry
107124712 CDS
T04299
Symbol
DHX38
Name
(RefSeq) DEAH-box helicase 38
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107124712 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gja03041
]
107124712 (DHX38)
Enzymes [BR:
gja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107124712 (DHX38)
Spliceosome [BR:
gja03041
]
Complex C
Other components
Step II factors
107124712 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
V-set
AAA_19
T2SSE
nSTAND3
Flavi_DEAD
PhoH
Microtub_bd
ResIII
AAA_30
SRP54
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
107124712
NCBI-ProteinID:
XP_015283696
LinkDB
All DBs
Position
Un
AA seq
1315 aa
AA seq
DB search
MEAFSEISCNHTVSGYNGLFWYKHSPDTALRSIIFTYLEAVKEGRLTMEVDKPNLATKLS
ISQVEIEDSAVYYCAKRSSPAAAAAEQHVFKRPAPRASLLGLDLLAAQKRREKERQAGGG
GGGKRYRDSADGKDGPAAAAQEQPQPPQPPPTAEGDEGGGDGQAASGRSSSSSSSHKDRH
YRSARVETPSHTGGVSEEFWERSRQRERERREQGVYASSKEEKERRRDHGRERDYDRKRD
REERDRSRRRSSSRSERDGSSEWSSSRKNEPESPRHRPKDAATPSRSSWEEEDSGYSGSQ
RSHWESPSPTPSSRDSERSHRGSATRDSDRRDRSIRSKYPEETPLPTPSYKYNDWADNQR
SLGPPPWLSRGRGRREEGDDSIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAS
SSEEYIRKREQHLQKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNA
AKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLALLARKGSQLVRKHREQKERRK
AQHKHWELAGTKLGNIMGIKKEEEEEGASQIMAEDGTVDYRTEQKFADHMKEKSEASSEF
ARKKSIAEQRQYLPIFAVQQELLTVIRDNSIVIVVGETGSGKTTQLTQYLHKDGYTDYGM
IGCTQPRRVAAMSVAKRVSEEMSVSLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLR
EADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDADKFAAFFGNV
PIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQVHLSSAPGDILIFMPGQEDIEVTSEQ
IVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMF
VIDSGYCKLKEGKKKFQVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQS
AYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGA
LDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREE
ESDQVREKFAVPESDHLTYLNVYLQWKNNGYSTLWCNEHFIHAKAMRKVREVRAQLKDIM
VQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGY
TPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQESRRRAKEEASAM
EEEMALAEEQLRARREERERRNPMGSIRSTRIYTPGRKEQGQPGTPLPTPARFGL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgttctccgagatctcctgtaaccacaccgtctctggatacaatgggctcttc
tggtacaagcacagccccgacacagcccttcgctccatcatctttacttaccttgaggca
gtgaaagagggacggttgacgatggaggtggacaagcccaacctggctacgaagctctcc
atcagccaggtggagatagaggactctgctgtctactattgtgctaagcggagcagcccg
gcggcggcggcggccgagcagcacgtcttcaagcggcccgccccgcgcgcctccctcctc
ggcctcgacctcctcgccgcccagaagcgccgcgagaaggagcgccaggccggaggagga
ggcggagggaagcgctacagggactcggccgacggcaaggacggccccgccgccgccgcc
caagagcagccgcagccgccgcagcccccgccaacggcggagggggacgagggcgggggg
gacggccaggccgcctccgggcgcagcagcagcagcagcagcagccacaaggacaggcac
tatcgctcagcccgggtggagactccttcccacacagggggtgtcagcgaggagttctgg
gagcgcagcagacagcgggaacgggaacgccgtgagcaaggcgtctacgcctcttccaag
gaggagaaagagcgcagaagggatcacggccgagagcgggactatgaccgcaagcgggac
agagaagagcgggacagaagccggcggaggagcagcagccggtctgagagggatggttcc
tcggagtggagcagctctcggaaaaatgaaccagagagtcctcggcaccgacctaaagat
gcagctacgccttcccgctccagttgggaagaggaggatagtggctacagcggttcccag
cgctcccattgggagtctccctcccccacaccctccagtcgggattctgagcgaagtcac
aggggatcagccacacgtgacagcgacaggcgtgaccggtctattagaagtaagtaccca
gaggaaaccccgttgccaactccgtcctacaaatacaacgactgggctgacaatcaacgt
tcgttgggtccaccgccctggctctccaggggcagagggaggcgtgaagagggagacgac
agcattgcctttgaaacggaagaggagcggcagcagtgggaagatgaccagcggcaagcg
gatcgggactggtacatgatggatgagggctatgatgagttccataaccctctggcctcc
tcgtcagaagagtacatcaggaagcgggagcagcaccttcagaagcagaagcagaagcgc
atctctgctcagcgcaggcagattaacgaggacaatgagcgctgggagacgaatcgcatg
ctgaccagtggtgtggtgcaccgcctggaggtggacgaggactttgaagaagacaatgct
gccaaggttcatctcctggtccacaacctggtgcctccgttcttggatgggcgcatcgtg
ttcaccaaacagccggagccggtcattcctgtcaaggacgccacgtcagacctggcactc
ctggcccgcaagggcagccagctcgtgcgcaagcatcgggagcagaaggagcgcaggaag
gctcagcacaagcactgggaactggctggcaccaaactggggaacatcatgggtatcaag
aaggaggaagaggaggagggggcgagccagatcatggcggaagacggcaccgtggattac
aggacagagcagaagtttgctgatcacatgaaagagaagagcgaagccagcagcgagttt
gccaggaagaagtcaattgcagagcagaggcagtatctgcccatctttgcagtgcagcag
gagctcttgacagtcatccgggacaacagcattgtgattgtggtgggagagacaggcagt
ggcaaaaccacgcagctaactcagtacctgcacaaagatggctatactgactacggtatg
atcggctgtacgcagccccgccgggtggctgctatgtctgtggccaagcgtgtcagcgag
gagatgagcgtgagcctgggcgaggaggtgggctacgcgatccgttttgaggactgcact
tccgagaataccgtgatcaaatacatgactgatgggatcttgctgcgcgaatctttgcga
gaagcggatcttgaccactatagcgccatcatcatggacgaggcacacgagcgctccctc
aacacggacgtgctttttggcctcctgcgtgaggtggtggcccggcgctcggacctcaag
ctgattgtcacctcagccaccatggatgcagacaagtttgccgctttctttggcaacgtc
cccattttccacatccccggccgcactttccccgtagacatcctcttcagcaagaccccg
caagaggactacgtggaggcagcggtgaagcaggccttgcaggtgcacctctccagcgcc
ccgggagacatcctgattttcatgcctggccaggaggatatcgaagttacctcggagcag
atagtggagcacctggaggagctggagaacgcgcctgccctggctgtgctgcccatctac
tctcagctgccctctgatctgcaggccaagattttccagaaggcgccagacggagtccgg
aagtgcatagtggccaccaacattgcggagacttccctgaccgttgacgggatcatgttt
gtgatagactctggttactgcaagctgaaggagggcaaaaaaaaattccaggtctttaac
ccgcggattggcatggatgctctccagatctaccccatcagccaggccaacgctaaccag
cgctcgggcagagctggcaggacaggccctgggcagtgcttcaggctgtacactcagagc
gcatacaagaacgagctgctgaccaccaccgtcccagagatccagcgcaccaacctggcc
aacgtggtgctgctgctgaaatctctgggggtgcaggacctcctgcagttccacttcatg
gaccctcctccggaagacaacatgctgaactccatgtaccagctgtggatcctcggggcg
ctggacaacacgggagggctgacgtcaacgggccgtttgatggtggagtttcccctggat
cccgccctctctaagatgctgattgtctcctgcgacatggggtgcagctcagagatcctg
ctgattgtctccatgctctctgtcccagccatcttctaccggcccaagggcagggaggag
gagagcgaccaggtccgggagaagtttgccgttcctgagagtgatcacctgacttacctg
aacgtctacctgcagtggaagaacaacggctactccaccctctggtgcaacgagcacttc
atccacgccaaggccatgcgcaaggtgcgagaggtgcgggcgcagctgaaggacatcatg
gtgcagcagcgcatgagcttggcttcctgtggcaccgactgggacattgtccgcaagtgc
atctgtgcggcctacttccaccaggctgccaaactgaagggcattggggaatacgtcaac
atccgcacagggatgccctgccatttgcacccgaccagctcgctgtttggcatgggctac
accccagactacattgtttaccatgagctcgttatgaccaccaaggagtacatgcagtgc
gtcacagccgtggatggcgagtggctggcggagctgggccccatgttctacagcatcaag
catgccggcaagtcacggcaggagagccgtcgacgggccaaggaggaggcgtctgccatg
gaagaggagatggcgctagcagaagagcagctgcgtgcccgccgggaggagcgagagcgc
cgcaaccccatgggcagcatcaggtccaccaggatctacaccccggggcgcaaggagcag
ggccagcctgggactcctctgcccactcctgctcgcttcggcctgtag
DBGET
integrated database retrieval system
