Gekko japonicus (Schlegel's Japanese gecko): 107124745
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Entry
107124745 CDS
T04299
Symbol
PABPC1
Name
(RefSeq) poly(A) binding protein cytoplasmic 1
KO
K13126
polyadenylate-binding protein
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03015
mRNA surveillance pathway
gja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107124745 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
107124745 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gja03019
]
107124745 (PABPC1)
03041 Spliceosome [BR:
gja03041
]
107124745 (PABPC1)
Messenger RNA biogenesis [BR:
gja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107124745 (PABPC1)
mRNA cycle factors
Stress granule specific factors
107124745 (PABPC1)
Spliceosome [BR:
gja03041
]
Complex C
Other components
Complex C specific factors
107124745 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
107124745
NCBI-ProteinID:
XP_015283737
UniProt:
A0ABM1LCQ0
LinkDB
All DBs
Position
Un
AA seq
606 aa
AA seq
DB search
MRVKHTSKYLLSQSVWLPFLTDVCFPLVEAERALDTMNFDVIKGKPVRIMWSQRDPSLRK
SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI
EKMNGMLLNDRKVXVHKLFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL
FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV
ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG
RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR
AVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQLAQLRPSPRWTTQGARPHPFQNM
TGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ
YKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLI
QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP
AGVPSV
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtaaaacacaccagcaagtatctcctttctcagtctgtgtggcttcctttcctg
acagatgtctgctttccattggttgaagctgaacgagctttagatacaatgaattttgat
gtcattaaaggaaagccagtgcgtatcatgtggtcccagcgtgatccatctctgcgtaaa
agtggtgttggaaacatctttattaaaaacctggacaaatcaattgataataaagctttg
tatgacacattttctgcttttggaaatatcctgtcttgtaaggttgtatgtgatgaaaat
ggatccaaaggctatggatttgtacactttgagacacaagaagctgcagaaagagctatt
gaaaaaatgaacggaatgttgcttaatgatcgcaaagtgtgagtacacaaattatttgtt
ggacggttcaaatctcgtaaagaacgtgaagcagaacttggagctcgggctaaggagttc
acaaatgtttacatcaagaattttggagaagacatggatgatgagagacttaaggaactc
tttggcaagtttgggcctgccttaagtgtgaaagttatgactgatgagagtgggaaatcc
aaaggctttggttttgttagttttgaaagacatgaggatgctcaaaaagctgtagatgaa
atgaatggaaaggaactgaatggaaaacagatatatgttggtcgtgctcagaaaaaggta
gaaagacaaacagagctcaagcgtaaattcgagcaaatgaagcaggacaggatcaccaga
taccagggagttaatctttatgtgaaaaatctagatgatggaatcgatgatgagcgccta
cgcaaagaattttctccatttggcacaatcactagtgcaaaggtcatgatggaagggggc
cgaagtaaaggatttgggtttgtctgcttttcctcaccagaagaagcaaccaaagcggtt
acagaaatgaatggtagaattgtggccactaaaccactgtatgtagccttagcccaacgt
aaggaagaacgccaagctcatctcaccaaccagtacatgcagagaatggcaagtgtgagg
gcagtgcccaatccggtcatcaatccttaccagccagcgcctccttcaggttatttcatg
gcagctattccacagactcagaaccgtgctgcgtactatcctactagccaacttgctcaa
ctcagaccaagccctcgctggactactcagggtgccagacctcatcctttccagaacatg
acaggtgccatccgccctgcagctcccagaccaccattcagtaccatgaggccagcttca
tcacaggttccaagagtgatgtcaacacagcgtgttgctaacacatcaacccaaactatg
ggtccacgtccagccgcagcagcagctgcagctactccagctgtgcgcaccgttccacag
tacaagtatgctgcaggtgttcgcaatcctcagcaacaccttaatactcagccccaggtt
gctatgcagcagcctgctgtccacgtgcaaggtcaggaacctttgactgcttcaatgttg
gctgctgcccctccacaagaacagaagcaaatgctgggagaacggctgttccctcttatt
caagccatgcaccccactctggcgggtaaaatcactggtatgctgttagagattgacaac
tctgagctccttcacatgcttgagtctcctgaatctcttcgttcaaaggttgatgaagct
gtagccgtactgcaagcccaccaagctaaagaagctgctcagaaagctgttaacaatcca
gcaggtgttccaagtgtctaa
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