Gekko japonicus (Schlegel's Japanese gecko): 107124750
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Entry
107124750 CDS
T04299
Symbol
SF3B1
Name
(RefSeq) splicing factor 3b subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107124750 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gja03041
]
107124750 (SF3B1)
03036 Chromosome and associated proteins [BR:
gja03036
]
107124750 (SF3B1)
Spliceosome [BR:
gja03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107124750 (SF3B1)
Complex B
107124750 (SF3B1)
Complex C
U2 SnRNP specific factors
107124750 (SF3B1)
Chromosome and associated proteins [BR:
gja03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
107124750 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
107124750
NCBI-ProteinID:
XP_015283743
LinkDB
All DBs
Position
Un
AA seq
1229 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKVALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGTTPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERGH
IMSMTPEQLQAWRWEREIDERNRPLSDEELDXLPEGYRVLPPPAGYVPIRTPARKLTATP
TPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKER
KIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKV
IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRP
DIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILM
GCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGI
RQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQC
CGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVD
DLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFG
TVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLG
VVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENC
IDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA
TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLF
EYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYV
WPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIG
SQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacagattcgagaaattcaaggc
aaaaaagtcgcccttgatgaagctcaaggagtcggccttgactcgacaggatactatgat
caagagatctacggcggaagcgatagccggtttgctggatacgtaacttcgattgctgca
actgaattagaggatgatgacgatgactactcctcgacaagcttgctcggccagaagaag
ccagggtaccatgccccagtggcattgcttaatgatataccacagtcaacggaacagtat
gatccatttgctgaacaccgcccacagaagattgccgatcgggaagatgagtacaaaaac
cgcaggcggatgatgataatttcccccgagcgtcttgatccctttgcagatggcgggaag
acacctgatcctaaaatgaatgccagaacatatatggatgtaatgcgtgaacaacattta
acaaaagaggagagggagataaggcagcagctagcagagaaggccaaggcgggggaactg
aaagtcgtcaatggtgccgcatcccagcctccatccaaacgtaagcggcgttgggatcag
actgctgaccagactcctgggaccacaccgaagaaattgtcaagctgggatcaagctgag
acccccgggcataccccatcactgcgatgggacgaaacgcctggccgtgcaaagggcagt
gagacacccggggcaacccctggatcgaaaatatgggatccgactcccagtcatactcca
gccggagcagcaacccctgggcgtgacacacctggtcacgcgacccctggccacgggggt
gcaacttccagcgcacggaagaatcgatgggacgagactccaaaaacagagagaggtcac
atcatgagcatgactcctgaacagctccaggcgtggcgatgggagagagaaatagatgag
agaaacagacccctctctgacgaagagctggatnngttaccagaaggctatcgagttctc
cctcctccggctggttacgtccctattcgtaccccggctcgtaaacttacagccacaccc
acacccctggggggaatgacgggtttccacatgcagaccgaagacaggaccatgaagagt
gtcaacgaccagccctccgggaatctgcctttcctgaagccagacgacatccagtacttc
gacaaactgctggtcgatgtcgacgaatcaacgctgagtccggaagagcagaaagagaga
aaaatcatgaaactgcttttgaagattaagaacggcaccccgccgatgaggaaggctgct
ctgcggcagattaccgataaagcgcgtgaatttggagcaggacccctctttaatcagatt
ttgcccctgctgatgtcaccgacacttgaagatcaagaacgccatttgcttgtcaaagtt
attgataggatcttgtacaaactggatgacttggtccgaccctacgtgcataagattctt
gtggtcattgagcccctgctgattgatgaagactactacgccagagtagaaggcagagag
atcatttctaacttggctaaggcggccggtctggcgacgatgatctccaccatgcgaccc
gatatcgacaacatggatgaatacgtgcgtaacacgacagctcgcgcctttgcggttgtg
gcctccgctctgggcattccttctctgctgcccttcttgaaagcggtgtgcaagagcaag
aagtcctggcaggccaggcacaccggcatcaagattgtccagcagatcgccatcctgatg
ggctgcgccatcttgcctcacctccggagtctggtggagatcattgagcacggcttggtg
gacgagcagcagaaagttcgcaccatcagtgctttggctattgccgctttggccgaggca
gccactccgtacggcatagaatcgtttgactctgtcctgaagcccctgtggaagggtatt
cgtcaacacagggggaagggcctggctgcctttttgaaagccattggctatctgattcca
ttgatggatgccgagtatgccaattactataccagagaagtcatgttgatccttatcaga
gagttccagtctcctgatgaagaaatgaaaaagatcgtgttgaaggtggtgaaacagtgt
tgtggcacagacggtgtggaagccaactacattaaaaccgagatccttcctccctttttc
aagcacttctggcagcacaggatggccctggacagaagaaattacagacaattggtcgac
acaaccgtagagctggccaacaaagttggggccgcagaaatcatttccaggattgtggac
gacctgaaagatgaggccgagcagtacaggaagatggtcatggagaccattgagaagatc
atggggaatctgggcgcagccgacatcgaccataagctggaggagcagcttattgatggc
attctgtacgccttccaggagcagaccacagaggactctgtgatgttgaacggcttcggc
acagtggtgaatgctctcggcaagcgagtcaagccgtacctgccccagatctgcggtacg
gttttgtggcgtctaaacaacaaatcggccaaagtgagacagcaggctgctgatctgatc
tctcgcactgcagtggtcatgaagacgtgtcaagaagaaaaattgatggggcacttgggt
gtggtgttgtatgaatacctgggcgaagagtatccggaagtattgggcagtatccttgga
gcacttaaagccattgtgaacgtcattggaatgcacaagatgacacctccaatcaaagac
ttgctgccgaggctcacgcctatcttgaagaacagacacgagaaagtgcaggagaattgt
atcgatttggtcggccgcatagcggacaggggcgcagaatatgtctccgccagggagtgg
atgaggatctgcttcgaactgctcgagttactaaaagcacacaagaaggcgatccgaaga
gcgaccgtgaatacgtttggctacattgcaaaagctatcggaccccacgatgtgctggcg
acactgctgaataatttgaaagttcaagagaggcagaaccgggtgtgcacaacggtcgcc
atcgccattgtggccgaaacctgctctcccttcaccgtcctgcccgccctcatgaacgaa
tatcgagtccccgagctgaatgttcagaacggcgttctgaaatctctttccttcctcttt
gagtatatcggggaaatggggaaggactacatctacgccgtcacccccttgctcgaagac
gctttaatggacagggacctcgttcacaggcagacggccagcgcagtggtacagcacatg
tcccttggggtgtacggcttcggctgcgaagactcgctgaatcacttgttaaattacgtg
tggcccaacgtgtttgagacgtcgcctcacgtcattcaggcggtcatgggggccttggag
ggcctgagggttgcgattgggccttgccggatgttgcagtattgtttacagggcctgttt
catcctgccagaaaagtcagagacgtgtactggaagatctataactccatctacattggc
tcacaggacgctctgatcgcccactatccgcgcatctacaacgacgagaagaacacctac
atccgctacgaactcgactatgtcttgtaa
DBGET
integrated database retrieval system
