Gekko japonicus (Schlegel's Japanese gecko): 107124771
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Entry
107124771 CDS
T04299
Symbol
VPS13D
Name
(RefSeq) vacuolar protein sorting 13 homolog D
KO
K19527
vacuolar protein sorting-associated protein 13D
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gja04131
]
107124771 (VPS13D)
Membrane trafficking [BR:
gja04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
107124771 (VPS13D)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
UBA_7
VPS13_VAB
UBA
EF-Ts_N
Motif
Other DBs
NCBI-GeneID:
107124771
NCBI-ProteinID:
XP_015283767
LinkDB
All DBs
Position
Un
AA seq
3122 aa
AA seq
DB search
MLEGLVAWVLNNYLGKYVSNLNTDQLSVALLKGAVELENLPLKKDALKELLPFEVKAGFI
GKVTLQIPFYRPHVDPWVISVSKLHLIGSPEKPGDFDEERERLFERETKKAVLLALEEKW
KKEREQAAESYWYSVTASVVTSIVENIELKIQDVHLRFEDNITNPSQPLAFGICIKNVSA
QNAVNEPVEELMRKKQLEIADFSIYWDTDCTLMGDLPPGELQEAMDKSMESREHNYILEP
VCTSALLKRNCSKEPLRSRHSPRLEFDIQMETIPLKLSQAQYRQIMDFLKELDRKERQLK
FRRWRPKVAVTGNCREWWLFALNANIAEIREQRERSSWEFALHRAQDAVSYTDLYYRKLK
DVPLSAAEQEEMDRIEDEQTFEELKILREIVYKQFHELAESIKEPLPDTLGGVSDLDLEA
PTTSCSSSSSSSGMLRYLQSWFPGWGGWYSDSQEALEADPFEGLLSETPEHWRPEEVAGA
DEFFDLSSDVSSIKHPFTKRDNVFAKLNLQLQGGSVTLLHAEKRSLRAKERAFMQLEFSG
VTVLAESLPRRNSSLFKVQLGSLFLRDLATEGSIFPVLVFPNPQKEVGCVSSIGLQASSS
DMNNQSTAADPAVPVFEMLYERNPVRSSFERRLEVSTRPLNIIYNPQAIKKVADFFYKGR
VHTSGFGYQSELELRVAEAARRQYNKLKMQTKAEIRQTIDRLLVGDFIEDSKRWTVCLDI
SAPQVIFPDDFKFADPVLVVLDLGRMLLTNSREEHKKKSPEGPSLDLSELSDDEYVTPLA
TPPSTPPPEASSTKTPEIAGVEISEEQLHAHLMSKKMYETYSLSFMDLQIMVGRVKDNWK
HAQDSDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHINEDKIIALNN
CFGRLSTPENETSSSFFADMDQRGSLHSSVVNLTQSVITVEQHTKEVLVESQLFLAEFKV
NCMQLGVESNGRYISVLKVFGTNAHFVKRPYDTEVSLTVHGLLLVDTMQTYGSDFDLLMA
SHKNLRFDAPTGSLRDSRPQSPVGGPCEAHPMDRRGLTETQPAASSSLSSGFPPHDESLI
KLEYQFVSAECPSMNLDSTLQVISVQMNNLDIILNPETIVELIGFLQKSFPKEDDSSPQP
LMTDLERSWSDQEYFQSTHAQCTEVAVDIHSLNILLLRTVTMINGEKLGRKIATASIGGT
KVNVSMGSTVDINGSLGCLHLMDLTLDNIKNQYVVSIGNTVRYEHFISDMGDFKPAFDDA
SSLPDALSFTFVEQSEEECSLHLRMASLHYNHSAKFLKEITLSIDELEENFCSMLKIAAT
KVTTVLATKTAEYSEMVSLFETTPRPKDSFYFESNEGEELLQPRPKCDTIKLILNVNIES
PVVSIPRKPGSPELLVGHLGQISIQNFVAGEDNSTSDRLQVEIRDIKMYSLNSSHLAGKK
EATTEMLHAVRSLGPAGSSSGSSQEDSHFTRHDFFESLHKGHAFHILNNATIQFRMEKIP
VERDAELTFSVAEDVETSSIMRIEGKFVNPLQVVLAKHVYEQVLQTLDNLVCSEDLTKPS
SDFPSSSYPPSGSPSASLRSTSSDFSTERKENGLFSHSSFSMASSKFAPVKEATQSFTQI
QANFHISELQVQLSGDLTLGAQGLVSLKFQDFDVEFTKDHPHTLSIQIALRSLLMEDLLE
KNPDSLYKNLMVSRGAPKPSTLAHKEYLSQSCPSVSNVEYPDMPRSLPSHMEEAPNVFQL
YQRPSCISHKKQKDDADSGYPLTPPPSPTANKPSAPCGKSDFDDSLVHINILLVDKKHPE
FSSSYGRINRSVDVDFNCLDVLITLQTWVVILDFFGIGSTAENHSMKSQPEDVQQAVKSE
ASILSDLEFQDSVNTKLDLKVHSLSLVLNKATTELAKANVSKLATHVEIIEGDLALQGSI
GSLSLSDLTSHGELYRERFTTSGEEALTFQIHKYGRPDPLLQRDCDIRVSLRMASVQYVH
TQRFQAEVVSFIQHFTQLQDVLGRQRAAIEGQTVRDQAQRASRVLLDIEAGAPVLLIPES
SRSNHLIVANLGKLRVKNKFLFAGAAGTFSLKDKQDSAQFSSPLGTPKHSMKKTSSTDES
KAAASSPSEGLFMKPSSSGPNLRLKSDATASVLTKPAKPSSLVAPDSSEEHVCLLDCIVV
DLQDMDIFAAERFPREYSKAPEETRVDMTFPSCVVRQTGRSLLAEPFRLKLQVGRNLDKE
ISHSVPDVSIHGNLSSVHCSLDLSKYKLIRGLLENNLGEPIEEFMRPYDLQDPRIHTVLS
GEVYTCVSFLIDMVNVSLELTNPQGKDGSLARFDFKKSKLLFESFSNQTKSINLVSHSMM
AFDTRYAGKRASLGMLNVFNCIFQSSKNTSTQGAIQIELHYRSTRDSSCFTVVLNNLRVF
LIFDWLLLVHDFIRTPSDTKKPPNLTPSRQRNYSSEMAVIPKAVKCGIVTKRSSPQISAE
KQLEVKINVTGTEFVVVEDMSSLDTSAIILKGTTVLTYKPKLVDRPFSGSLFGIEVFSCR
LGNEQETALSIIDPVQIQVELVGNSSYPSGSGLLDAFNSEDFPPVLEIHLQALDIRLSYN
DVQLFLAIAKSIPGQTSSAAPDASASDGRASVSASPASVKEVTGPASETTDASKHTLDPV
LELQLARLQELGFSVDDCRKALLVCQGQLKKAASWLFKNAEPLKCLPSDSSQRESQGSTA
LRLISGVEVKAESICICFIDDCMDCDVPLAEFTFSRLNFLQRLRASPEGYAHFTLSGDYY
NRELSGWEPFIEPWPCSVTWQQQPASRLHPSRLKLEVKTKHRLDISITSVLIEQYACTKQ
SWMADYCKQEKEVEAIESEEWMGSSVDPPSFGQAEMKAPKRRHPFVPFALRNHTGCTLWF
ATLTTTPTRAALSHSGSPGVLPEENGTFLDDAHKVSEWREVLTGEEVPFEFEARGKLRHR
HTHDLRIHQLQVRVNGWEQVSPVSVDKVGIFFRYAAPDKSTSSSTVGSPISRTNIIHPHV
YFSSLPPVRVVFAVTMEGSARKVITVRSALMVRNKLEIPMELRLDSPSAPDKPVVLPSVM
PGDSFAIPLHLTSWRLQARPKGMGVFFCKSPIHWTNVQKASEVSSSKRECHAMDSENSRF
FR
NT seq
9369 nt
NT seq
+upstream
nt +downstream
nt
atgttggagggattggtagcctgggttctcaacaactatctaggcaaatatgtcagtaac
ctgaacacggaccaactctcagtagctcttctgaaaggtgctgtggaattggaaaattta
ccattaaagaaagatgccttgaaggaattgctgccgtttgaggtcaaagctggcttcatt
ggcaaggtcacgctgcagataccattttatcgcccacacgtggacccctgggtgatatcg
gtgtccaaattacacctgattggctcgccagagaaaccaggagattttgacgaagaaaga
gagaggctgtttgaaagagaaaccaagaaagcggtcttattagcactggaagaaaaatgg
aaaaaagaacgggagcaggcagcagagtcttactggtattcagtcactgcctctgtcgtc
acaagcattgtagagaacatcgaattaaaaatccaagacgtccatttaaggtttgaagac
aacatcacaaatccttcgcagcctcttgcctttggaatctgcattaaaaacgtctccgcg
cagaatgctgtgaatgagccagtggaggagctaatgaggaagaaacagctggagattgct
gatttcagcatttattgggatactgactgcactttaatgggagacttgccaccgggggaa
ctgcaggaagccatggacaagagcatggagagccgagagcacaactacatcctggagccc
gtgtgtacctccgctcttctcaagagaaactgttcgaaggagcccctgaggtcgcggcat
tctccccggcttgagtttgacattcagatggagacgatacctctgaaactttcgcaggcc
cagtaccggcaaataatggacttcttgaaggaactggaccgaaaagagcggcagcttaag
tttagaagatggagacccaaggtggccgtaactggaaactgccgcgaatggtggctcttt
gctctgaatgcaaacatcgctgagatcagagagcagagagaacgctcctcctgggaattt
gctttgcatcgggctcaagacgccgtctcctacactgatctttattacaggaagttgaaa
gatgtgccactctctgctgcggagcaggaagagatggaccggattgaggacgaacagact
tttgaggagctgaaaatcttgcgtgagatagtttacaaacaattccacgagctggccgag
agcatcaaggagccgttacctgataccttggggggagtctctgatctggatctggaagcc
cccaccacatcctgcagcagcagcagcagcagcagtggaatgctgcggtaccttcagtct
tggtttcctggctgggggggctggtacagcgactcccaggaagcattagaagcagaccct
tttgagggattgctctcagagaccccagaacactggagacctgaggaagttgcaggtgcc
gatgaattttttgacctgagttccgacgtctccagcatcaagcaccccttcacaaagagg
gacaacgtctttgccaagttaaatctccagctgcagggtggctccgtcaccttgctgcac
gcggagaagcgcagcctgcgagcgaaagaaagagccttcatgcagttggaattttcagga
gtgactgtcctagcagaatctctcccccgcaggaactcttcccttttcaaagttcagctt
ggcagcctcttcctccgagacttggcaacggaaggatctatatttccagtcctggtcttc
cctaaccctcaaaaagaagttggctgcgtctcttccatcggtctccaagcttcttcttca
gacatgaataatcagagcactgctgccgaccccgctgtcccagtttttgagatgctgtat
gagagaaacccagtccgcagcagttttgagcgacgcctcgaagtcagtaccagacctcta
aatatcatttacaacccacaagccattaagaaagtagccgatttcttctacaagggaagg
gttcatacctcaggttttggataccagtctgagcttgagctcagggtggccgaagctgcc
aggagacaatacaataagctcaaaatgcaaaccaaggctgaaatcagacaaaccattgac
cgtctgctggtgggggacttcatcgaagacagcaagcggtggaccgtgtgccttgacata
tctgcccctcaagtaatcttccccgacgactttaaatttgcagatccagttttagtagtg
ctagacttgggaagaatgttacttaccaattctcgagaggagcataaaaagaagagccca
gaggggccgtcactggatctgagcgaactgagtgacgacgaatacgtaacgcctctcgcc
actcctcccagcaccccgcctccagaagccagtagtaccaaaactcccgagatcgctgga
gtcgaaatcagcgaagagcagctgcacgcacacttgatgagtaaaaaaatgtacgagacc
tacagcttgtcgttcatggatcttcagatcatggtagggagagtgaaagacaattggaag
catgctcaggacagtgacgttggcccgacgcatgtggtggagaaattcaacgttcacttg
cagctggagcgcaggttgatatacacttcggatcccaagtatcccggggcggtcttgtct
ggaaatttaccagatttgaaaatacacattaacgaagataaaataatagccctgaataac
tgctttggaaggctgagcacacctgaaaacgaaacctcaagttctttcttcgcagatatg
gaccagcgtggaagcttgcatagttcggtcgtgaatttgactcagagtgtcatcacagta
gagcagcacacaaaggaagtccttgtcgagtcgcagctgttcttagcagagttcaaggtg
aactgcatgcagctgggtgtggagagcaatggccgctacatctcagtcctcaaggttttt
ggcacgaatgcccattttgtgaagaggccttacgataccgaagtctcgctcactgttcac
ggcttgctcttggtcgataccatgcagacatacggctccgactttgacctccttatggct
tctcacaagaatctccgttttgatgccccaacaggaagtcttcgagatagccggccacag
tcccctgttggtggaccctgtgaggcccatccaatggataggagaggcttgacggaaaca
caacctgcagcatcgagcagtttatccagtggcttccccccacatgatgaatccttaatt
aaactggaatatcagtttgtgagtgcggaatgcccgtctatgaacttggatagcaccctc
caagtgatatcagtgcagatgaacaacttggatatcattcttaatccggagaccattgtc
gagctgattggcttcctccagaaatctttcccaaaggaggatgactctagtcctcagcca
ttaatgaccgacttggaaagaagttggagtgaccaagaatacttccagtctacccacgcc
cagtgtacagaagtagcagtggatatccactcgttaaacatacttctccttcggactgtt
acgatgataaatggagaaaagcttggcaggaagattgcaaccgcgagcattgggggcacc
aaagtgaacgtctccatgggtagcacagtggacatcaatgggtctctgggttgtttgcac
cttatggatttgaccctggacaacataaaaaaccagtatgttgtcagcattgggaacacc
gtaaggtatgaacatttcatttctgacatgggcgacttcaagcctgcgtttgacgacgcc
agtagccttccagacgctttgagcttcacgttcgtcgagcagtcggaagaggaatgttcg
cttcacctccggatggcgtctttgcattacaaccactcggcgaagtttctgaaagagatc
accttatccatcgatgagctcgaggagaacttctgcagcatgctgaagatcgcggcaacc
aaggtgacgaccgtcttggccactaaaaccgccgaatactccgaaatggtttctttgttt
gagaccacgcctcgaccgaaggactctttttactttgaaagcaacgaaggggaggaactc
ctgcagccacgccccaaatgtgacaccatcaagctgattttgaacgtcaacatcgagtcc
ccggtcgtgtccataccccgtaagccgggcagccccgaactgctggtggggcacctgggg
caaatatccatccagaattttgtggcgggagaagacaattcgacaagcgacaggcttcag
gtggaaatcagagacattaagatgtattctctaaacagcagtcatttggcaggcaagaaa
gaagcaaccactgagatgctacatgcagtgcgctctctgggacctgccggcagcagcagt
ggcagcagccaggaggattctcattttactcggcacgacttctttgagtccttgcataaa
ggtcacgctttccatatcttgaacaatgctacgatccagttcagaatggagaagattcca
gtagagagagatgcagagttgaccttctccgtggctgaggatgttgaaacgtcaagcatc
atgagaattgaggggaagtttgttaaccctttgcaggtggtgttggcaaaacacgtctat
gaacaagttttgcagactctcgacaacttggtttgcagcgaagatctgacgaagccctcc
tccgacttcccatcctcctcctatcccccttccggttctccttctgcatcacttcgaagc
acaagttccgacttctccacggagaggaaggagaacggactcttcagtcattccagtttt
tctatggcttcaagcaagttcgctcctgtcaaggaagcgactcagtcttttacccagatc
caagccaacttccatatttctgagctgcaggttcagttaagtggtgacctgacgcttgga
gcccagggcctggttagcttaaaattccaggattttgatgtcgaatttactaaagatcac
cctcataccctgtccatccagattgccctacggtctctgttgatggaggatcttctggag
aagaatccagattctctgtataagaacctcatggtgtcccgtggagcccccaaaccatcc
actttagctcacaaagaatacctttcccaatcctgcccctctgtgtctaatgtggaatat
ccggacatgccccgttccctcccttcgcacatggaagaagcccccaatgtctttcagttg
taccaaagacccagttgcatctcccacaagaaacaaaaagatgacgcggattcaggctac
cccttaactccccctccttctcccactgcgaacaagccgagcgctccttgcgggaagagc
gattttgacgattctttggtgcacatcaatatattgctagtggacaagaagcacccagag
ttctcttccagctacggcaggatcaaccgcagtgtggatgttgacttcaactgcttagat
gtcttaataactctacagacctgggtggtgatcctggatttttttgggatcggatccacc
gccgagaaccatagcatgaagtcgcagcctgaagacgtgcagcaggcagtgaagtcagaa
gcgagcatcctgtcagacctggaattccaagattctgtgaacaccaaactggacctgaag
gtccattccctgtccttggttctgaataaggcgaccacagagcttgctaaagcgaacgtc
tccaagcttgccacccacgtggagataatcgaaggtgacttggcccttcagggaagcatc
gggagcttatctttaagtgacctcacctcacatggggagctttaccgagaacgctttact
accagtggtgaagaggcactcacctttcagatccacaagtatggccggcccgatcccctg
ctgcagagagattgtgacatacgtgtgagcctgcggatggcctcagtgcagtacgttcac
acccagcgcttccaagcggaggtggtgtctttcatccagcatttcactcagctccaggac
gtcttggggcgccagagagcagcgattgaagggcagacggtaagagaccaggcccagcgt
gcctccagagtgctgctggacatcgaagccggcgctcctgtcctcctgatccccgaaagc
tccagatccaaccacctgatcgtggccaatcttggcaagctgagagtcaagaacaagttc
ctgtttgccggcgccgcgggtaccttctccctgaaagacaagcaagattctgctcagttt
tcttcacccctgggaacgccgaaacacagcatgaagaaaacatcaagtacggatgagtcc
aaggcggcagcgtcgagtccttctgaagggttgttcatgaaaccgtcatcttccggaccc
aatctgagactgaaaagtgacgccacggcgagtgttttaaccaagcctgctaagccatcc
tctttggtagccccagacagttcggaggaacatgtctgcctgttagactgcattgtggtt
gatctgcaggatatggatatttttgcggctgaacgattccccagagaatattcaaaggcc
ccagaggaaaccagagtggatatgaccttcccttcctgtgttgtccggcagacgggcaga
agcctcttggctgaaccgttccgactgaagctgcaagtgggaagaaacttggacaaagag
ataagccactcagttcctgacgtatccattcatggcaacctgtcatcggtccattgttct
ctggatctcagtaaatataaactgatccgaggactcctcgagaataatctgggggaaccg
atagaggagttcatgcggccgtatgacttacaagacccaagaatacacactgtgttgagt
ggagaagtgtacacctgcgtgtctttccttatcgacatggtcaacgttagtctggaattg
acgaacccccaagggaaggatggctcgctcgccaggtttgacttcaagaagtccaaattg
ctctttgagagtttctccaatcaaaccaaatccataaacctggtctcacattccatgatg
gcatttgacacgcgatacgccgggaagagggcatctttgggaatgctgaacgtgttcaac
tgcatcttccagtcgtccaagaacaccagcacccaaggagcgatacagatcgagcttcat
tatagatccaccagggattcctcctgcttcacagttgtcctgaacaaccttcgtgtgttc
ctgatctttgactggctcctgcttgttcacgacttcatacggacgcccagcgataccaag
aagcctcccaacctcactccctccagacaacgcaattacagcagcgaaatggcggtcatt
cccaaagcggtgaagtgcgggatcgtcacaaagcgttcctctcctcagatctctgctgaa
aaacagttggaagtcaagatcaatgtgacgggtactgaatttgtggtggttgaagacatg
tcctctctggataccagtgccattattctgaaagggaccacggttctcacttacaagccc
aaactggtggatcgccctttctcaggcagtttgtttggcattgaggttttttcatgccgg
ctgggaaatgagcaggaaacggccctctctatcatcgatcctgtacaaattcaggttgaa
cttgtggggaattcttcatatcccagtgggtccggattgctggatgcattcaacagtgaa
gacttcccgcctgttttagagattcacttacaagcactggacatcagattgtcttacaat
gacgtgcagctgtttctggcgatcgccaagtccattccgggccagaccagcagcgccgcg
cctgacgcttctgcctcagatggcagagcgtccgtttctgcttctcctgcttcggtaaaa
gaggtcacgggaccggcctcagaaaccacagatgcatctaaacacactctggatcctgtc
cttgagttacaactggcccgactgcaggaactgggatttagtgtcgacgactgtcgcaaa
gctcttttggtgtgccaaggtcagctgaagaaagcagcgagctggttgttcaagaacgcc
gaacctctgaagtgtttgccatcggactcaagtcagcgagagagccagggctccacggcc
ctgcgcttgatttccggagtggaagttaaagccgagagcatctgcatttgcttcatagat
gactgcatggactgtgacgttcccttagctgaatttaccttttcacgtctgaattttctc
cagcgtctgagagccagccccgaaggctatgctcattttacgctctctggagattattat
aaccgtgagctttccggctgggaacccttcatcgagccttggccgtgctcggtcacctgg
cagcagcagccagccagccgccttcacccttctcggttgaagctggaggtgaaaacgaag
catcgcctggacatcagcatcacttctgtgttaattgagcagtacgcttgtaccaaacag
tcatggatggcagattactgcaaacaggagaaagaagtggaggccatcgaatccgaagaa
tggatgggctcttcagtcgatcctccgtcgtttgggcaggctgaaatgaaggctccaaag
cgtcgacaccctttcgtgcccttcgccctgcggaatcacaccggttgcactctctggttt
gccacattgaccaccaccccaacccgtgccgcgctctcgcacagcggaagccccggtgtc
cttccagaggaaaacggcacattcctcgatgatgcgcacaaagtcagcgagtggcgggaa
gtcctgacgggcgaagaggttccgtttgagtttgaagccagggggaaactgaggcacagg
cacacacacgacctaaggattcatcagctgcaggtgcgagtgaacggctgggagcaagtc
agtccggtctcggtggacaaagtggggatttttttccgatacgcagcccccgacaagagc
acgtcttcatcgaccgttggcagcccaataagcaggacaaacatcatccatcctcatgtt
tatttttcttccctgcctccggtccgagtggtctttgcggtcaccatggaaggcagtgcc
cggaaggtgatcacggtgcgctcggccttgatggtgaggaacaagctggagattccgatg
gagctgaggctcgacagtccttccgctcctgacaaacccgtcgtcctgccttccgtaatg
ccaggggactcctttgctattcctcttcacctcacctcctggcgcctgcaggccaggccg
aagggaatgggtgtcttcttctgcaagtccccgatccactggacaaacgtccagaaggcc
tcggaggtcagcagcagcaagcgagagtgccacgcgatggattctgaaaacagtcgattc
ttcaggtaa
DBGET
integrated database retrieval system
