Geobacillus genomosp. 3: M493_03560
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Entry
M493_03560 CDS
T02798
Name
(GenBank) ATP-dependent helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
gjf
Geobacillus genomosp. 3
Brite
KEGG Orthology (KO) [BR:
gjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gjf03400
]
M493_03560
Enzymes [BR:
gjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M493_03560
DNA repair and recombination proteins [BR:
gjf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
M493_03560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_30
AAA_22
ResIII
AAA_16
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AGT31019
UniProt:
S5YWE1
LinkDB
All DBs
Position
601110..604838
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AA seq
1242 aa
AA seq
DB search
MNVTFRPKPAGSRWTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDI
DRLLVVTFTNAAAAEMRARIGEALERELAKRPHSLHLRRQLSLLNRAPISTLHSFCLDVI
RKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKADNERFFAVVDAYTGDRSDAE
LQEMIFALYEFSRSHPTPDEWLAGLVSMYDVDEQTPVKTLAPARYIAQHATMELAAARRF
LRLALTLAGKERGPKPYVKRLHEDMDLIADLERRLSGSWDELYHALQSLSFGRLPACRGD
GFDAQLIDEAKALRDQAKKKIEALREDVFSLRPSAWLRHMREMKPVVETIVALVRRFSAM
FETAKREKGIVDFSDLEHYCLRILRRRDPETGEWQPSAAALEYQGQFDEVLVDEYQDTNL
VQETILQLVKKGNERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADGEAGGMKIDL
ANNFRSRAEVLDGTNFLFAQIMGEAVGEMTYDEAAQLKYGADYPSGPDAVPEVMIIDRQC
SAEEDEEEAAELEAAELEARLMAEKIKELVSRPFYVYDRSSGQPRRAMYRDIVVLVRSMT
NAPQMIEQLQAHGIPAAADLSSGYFQATEISVMLSLLKVIDNPHQDIPLAAVLRSPLFRF
DENELAMIRLSDPKGTFFEALQSFRQKPAETEEEEKAKKKATAFFKQLEVWRTMARRGSL
ADLIWQLYRDTQFYDFVGALPGGKQRQANLRALYDRARQYESTSFRGLFRFLRFIERLQE
RGDDLGAARPLSEQEDVVRIMTIHSSKGLEFPIVFLAGLARPFYTRDLRHPYLLDKELGF
AARFVHPQLRISYPTMPLLAIQVKKRLELLAEEMRILYVALTRAKEKLYLLASVNDVNKE
IEKWKGVAAESGWLLPDDVRASARSYLDWIGRALIRHRDARALAAVEAAEEISSHPSVWR
LAIVSAAKLRSGETPADQKDGGTLAALEQGRPVPIGGEWEEEARRRLLWRYRYGKETAVR
AKQSVSELKEQRALFGEQADEWMPRKGTAPLFSRPRFMQKKTLTPAEKGTALHIVMRHLD
LQAPIDESSIRRQIMRLVEKELLSAEQAEAVDAAMIVAFFATDIGRRLCAAREIYREVPF
SLGLPADELYGGEEMESGRRLLVQGVIDCVFADERGYVMIDYKTDEVTGRFAGQKEEAAR
FLLGRYGAQMRLYRRAIEQIWHVPVAECYLYSFDGEYFLAVE
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcacgtttcgcccgaagccagccggaagccggtggacggatgaacaatggaag
gcgatcgcggccggcggccgggatattctcgtcgccgcggcggcgggatccggaaaaaca
gccgttcttgtcgagcgaattattcaaaaagtgacggcggaagaaggggcagttgatatt
gaccggctgcttgtcgtcacgtttacgaatgcggcagcggccgagatgagagcgagaatt
ggcgaagcgctcgaacgagagctcgccaagcgcccgcattcactccatttgcggcgtcaa
ctcagcttgctcaaccgcgccccgatttcaacgctccattctttctgtttggatgtgatc
cgcaaatattattatttgctcgatttggatccgtcgtttcgcattgccgatgagacggaa
atcgagctgttgaaagaagacgtccttgaagaactgctagaggaagaatacggaaaagcg
gacaatgaacgcttttttgccgttgtcgacgcctataccggtgaccgcagtgacgcggag
ctgcaggagatgatattcgcgctttacgaattttcccgttctcatccgacgccggatgaa
tggttggccggtttagtatcgatgtatgatgtcgacgaacaaacgccggtgaagacgctg
gcgccggcgcgctatatcgctcagcacgcaacgatggaactggcggcggccagacggttc
cttcgcttggctttgacgcttgctgggaaggaaaggggtccgaagccgtacgtaaagcgg
ctgcacgaagatatggacttgatcgctgatttggagagaaggctgtccgggtcgtgggat
gagttgtatcatgcgctgcagtcgctctcgttcggtcggcttccggcctgccgcggcgat
gggtttgacgcacaactcatcgatgaggcgaaagcgctgcgcgatcaggcgaaaaagaaa
attgaggcattgcgtgaagatgtgttttcgctccgtccgtctgcttggcttcgccatatg
cgcgagatgaagccggtcgtcgaaacgatcgtcgccctcgtccgccgcttttccgccatg
tttgaaacggcgaaacgggaaaaggggattgtcgatttttccgacttggaacattattgt
ttgcgcattttgcgtcggcgcgatccggaaacaggcgaatggcagccgtcagccgccgct
ttggagtaccaagggcagttcgatgaagtgctcgtcgatgagtatcaagataccaacctt
gtccaggaaacgattttgcagctcgtcaaaaaaggaaatgagcgaacaggcaacttgttt
atggtcggcgatgtcaaacaatcgatttaccggttccgactcgccgagccgatgctgttt
ctcgataagtataagcggttcactgccgatggggaagccgggggaatgaaaatcgacttg
gcgaacaatttccgcagccgcgccgaagtgcttgatgggacaaacttcttattcgctcaa
attatgggtgaagccgtcggggagatgacgtacgatgaagcggcccaactaaagtacgga
gccgattatccaagcgggccggatgccgttccggaagtgatgatcatcgaccggcaatgt
tcggcggaagaagatgaagaagaagcggccgaacttgaggcggccgagttggaggcgcgc
ctgatggcggaaaaaattaaagagcttgtttcgcgcccgttttatgtgtatgaccgttcg
agcgggcaaccgcggcgcgctatgtatcgtgacatcgtcgtgcttgtccgttcgatgacg
aatgcgccgcaaatgattgagcagttgcaggcgcatggcattccagccgccgctgattta
tcatccggctatttccaggcgacagaaatttcggtgatgctgtcgctgttgaaagtgatc
gacaatccccaccaagatattccgctggctgccgtgctccgctcaccgctattccgtttt
gatgaaaacgagctcgctatgatccgtctcagcgacccgaagggcacgtttttcgaggcg
ctgcaatcgtttcgccaaaagccggcggaaacggaagaggaagagaaggccaagaaaaaa
gcgactgcctttttcaagcagttggaagtgtggcgcacgatggcgcgccgcggttcatta
gcggatctgatttggcagctatatcgcgacacgcagttttatgattttgtcggtgcgttg
ccgggcggaaagcagcggcaagccaatttgcgcgccttgtatgaccgcgcccggcaatac
gaatcgacgtcattccgcgggctgttccgctttctccgcttcattgagcggctgcaggag
cgcggcgacgacttaggggcggcccgcccgctcagcgagcaggaagatgttgtgcgcatc
atgacaatccatagcagcaaagggctcgagtttccgatcgtttttcttgccgggctcgcc
cgcccgttttatacgcgcgatttgcgtcatccgtatttgcttgataaagagctcggcttt
gccgcccgatttgtccatccgcagctgcgcatcagctatccgaccatgccgctgctggcc
attcaagtaaagaagcggctcgagctgctcgccgaggaaatgcgcattttgtacgtcgcg
cttacaagggcgaaagagaaactgtacttgcttgcctcagtcaacgatgtaaacaaggag
attgaaaaatggaaaggagtggctgctgaaagcggttggcttcttcctgacgatgtgcga
gcgtcggcccgctcatacttggattggatcggacgggcgctcatccgtcatcgtgacgcg
cgcgcccttgcggcggttgaggcggcggaagaaatttcctctcacccgtccgtgtggcgt
cttgccatcgtgtcggcggccaagctgcgcagtggtgaaacgccagctgaccaaaaggat
ggcggtacgcttgctgcgcttgaacaaggccgtcccgttccaatcggaggggaatgggag
gaggaagcaaggcgtcgcctgttgtggcggtatcgttacgggaaggagacggccgtgcgc
gccaaacagtcagtttcggaactgaaagaacagcgtgcgctgtttggtgagcaggcggac
gaatggatgccgcgcaagggaacagcgccgctgttttcccggccgcgctttatgcagaaa
aaaacgttgacgccagccgaaaaagggactgcgcttcatatcgtcatgcgccatctcgat
ttgcaggcaccgatagacgaatcatcgattcgccgtcagatcatgcggcttgtggagaaa
gaattgttgtcggctgagcaagctgaagcggtcgatgccgctatgatcgtcgcctttttc
gctacggatatcggccgccgcctttgcgccgcccgtgaaatataccgcgaggtgccgttc
agcttggggcttccggctgacgaactttacggcggtgaggagatggagagcggccgccgc
ctgctcgtgcaaggggtcattgattgcgtatttgcggatgagcgtgggtatgtgatgatc
gactataagacggacgaggtgacagggcgttttgccggccaaaaagaggaggccgcccgc
tttttgcttggtcgttacggggcgcaaatgcgcttataccgacgggctattgaacaaatt
tggcacgtgccggtggcggaatgttacctatattcgtttgacggcgaatattttctagcc
gtcgagtga
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